Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k06
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70750-4|CAA94739.2|  187|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024817-42|AAF59576.2|  340|Caenorhabditis elegans Hypothetical...    29   2.3  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    28   5.4  

>Z70750-4|CAA94739.2|  187|Caenorhabditis elegans Hypothetical
           protein C50F4.4 protein.
          Length = 187

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 345 CHGFLQLTVYV*SEYFTPR*EAKLDHVHETLHDFGF*ETILVVFKLETFADLFDFL 178
           CH  L +  Y  + YF P+ E  +D + E  +     + IL  +  ETF+ LF+ L
Sbjct: 60  CHQLLNVWKY--AIYFQPKSEVFIDTLQENGYPDAVVKGILEAYTSETFSQLFESL 113


>AC024817-42|AAF59576.2|  340|Caenorhabditis elegans Hypothetical
           protein Y54G2A.22 protein.
          Length = 340

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 261 ETLHDFGF*ETILVVFKLETFADLFDFLVH-NWLHHPIEQLHNEHLFL 121
           E  HD G     L+ F +E   ++FDFL+  + L HP  ++  E +F+
Sbjct: 169 ELFHDIGALPNSLIEFTIEG-VEVFDFLILIDALLHPDREIETERIFI 215


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 85  LDYNNLGSMDMSQKQMLVMKLLNRVMEPVMYKEIEEIGKSFKF 213
           LDYNNL     +  Q+    L+N + E +  KEI E  K   F
Sbjct: 307 LDYNNLYIFSTTLFQLCYQALINGLSEGLSKKEIRECFKKQDF 349


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 94  CSPTSPQPSWLSQPPTPR*PSLCRQPVAS 8
           C+  S Q  WLS P T   P +C++ V S
Sbjct: 249 CALLSSQEQWLSSPCTSSQPFVCKRSVGS 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,218
Number of Sequences: 27780
Number of extensions: 338097
Number of successful extensions: 1092
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)