Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k05
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 311 8e-86
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 223 2e-59
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 182 4e-47
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 169 4e-43
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 153 3e-38
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 129 4e-31
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 127 2e-30
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 126 3e-30
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 124 1e-29
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 111 8e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 108 1e-24
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 102 6e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 99 8e-22
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 96 4e-21
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 95 7e-21
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 94 2e-20
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 93 5e-20
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 92 7e-20
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 92 9e-20
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 83 3e-17
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 69 7e-13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 68 2e-12
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 64 2e-11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 64 2e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 53 4e-08
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 48 1e-06
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 46 4e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 44 2e-05
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 37 0.004
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 34 0.019
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 32 0.10
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 31 0.18
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 29 0.72
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 29 0.95
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 2.2
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 3.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 6.7
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 8.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 8.9
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 311 bits (763), Expect = 8e-86
Identities = 155/250 (62%), Positives = 193/250 (77%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
++ RGR++L + + LVLDEADRMLDMGFEPQIR IVE M ERQTLMFSATFP+ I
Sbjct: 319 LIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDI 378
Query: 181 QLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEED 360
QLLA+DFL +YVFL+VGRVGSTSENITQKVV V++ +KRS+ P E
Sbjct: 379 QLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDIL-------HTLPPEG 431
Query: 361 QLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVA 540
L L+FVETK+ AD L +YL + +P TSIHGDR QRERE AL FR+G+T I+VATAVA
Sbjct: 432 -LTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVA 490
Query: 541 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLV 720
+RGLDIP+V HVIN+DLP+D+++YVHRIGRTGR GN G A +FFN N+G+A++L+ELL
Sbjct: 491 SRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQ 550
Query: 721 EAKQDVPNWL 750
EA Q+ P++L
Sbjct: 551 EANQECPSFL 560
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 223 bits (545), Expect = 2e-59
Identities = 117/247 (47%), Positives = 159/247 (64%), Gaps = 1/247 (0%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
ML + L +LVLDEADRMLDMGFEPQIRKIV+ P +RQT+MFSAT+PK++
Sbjct: 259 MLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVD-QIRP---DRQTVMFSATWPKEV 314
Query: 181 QLLAQDFLYNYVFLAVGRVG-STSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEE 357
Q LA+D+L +Y+ + VG + + S NI Q V VD DKR+ + +
Sbjct: 315 QRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA------RLGKDIEEVLKDR 368
Query: 358 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 537
D +L+F TK+ AD + +L G+P +IHGD+ Q ER+ L FRTG++PI+VAT V
Sbjct: 369 DNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDV 428
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELL 717
A+RG+D+ + HV N+D P + E+YVHRIGRTGR G G A ++F N AR+LV +L
Sbjct: 429 ASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSIL 488
Query: 718 VEAKQDV 738
EAKQD+
Sbjct: 489 SEAKQDI 495
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 182 bits (444), Expect = 4e-47
Identities = 112/249 (44%), Positives = 150/249 (60%), Gaps = 3/249 (1%)
Frame = +1
Query: 13 GRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKT--GERQTLMFSATFPKQIQL 186
G + +LVLDEADRMLD GFE IR I+ HT T G RQT+ FSAT+P+ ++
Sbjct: 303 GSIDCSQVGYLVLDEADRMLDTGFEQDIRNIIS-HTPDPTRNGSRQTVFFSATWPESVRA 361
Query: 187 LAQDFLYNYVFLAVGRVG-STSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQ 363
LA FL + V + +G + S+NITQ V +D D RS + ++D+
Sbjct: 362 LAATFLKDPVKITIGSDELAASQNITQIVEILD--DPRSKERMLDNLLRKHLSSGGKDDK 419
Query: 364 LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAA 543
IL+FV KK A ++E L ++ Y V IHGD +Q R AL F++G+ P+LVAT VAA
Sbjct: 420 -ILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAA 477
Query: 544 RGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVE 723
RGLDIP V+ VIN P +E+YVHRIGRTGR G A +FF ++ A +LV +L +
Sbjct: 478 RGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQ 537
Query: 724 AKQDVPNWL 750
AKQD+P L
Sbjct: 538 AKQDIPEGL 546
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 169 bits (411), Expect = 4e-43
Identities = 97/247 (39%), Positives = 141/247 (57%), Gaps = 1/247 (0%)
Frame = +1
Query: 13 GRVA-LDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLL 189
GRV L C +LVLDEADRM D+GFEPQ+ +I+ + P +RQT++FSATFP+ ++ L
Sbjct: 561 GRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIIN-NIRP---DRQTVLFSATFPRAMEAL 616
Query: 190 AQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLI 369
A+ L V + VG + + Q V E K S Q D
Sbjct: 617 ARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQL-----DVRT 671
Query: 370 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 549
LVFV+ ++ AD L L +GY SIHG ++Q +R+ + ++ G +L+AT+V ARG
Sbjct: 672 LVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARG 731
Query: 550 LDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAK 729
LD+ ++ V+N+D P+ +E+YVHR+GRTGR G+ GVA +F A D+ + L +K
Sbjct: 732 LDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSK 791
Query: 730 QDVPNWL 750
Q VP L
Sbjct: 792 QPVPKEL 798
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 153 bits (371), Expect = 3e-38
Identities = 91/265 (34%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Frame = +1
Query: 4 LARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVEC----HTMPKTGE----------- 138
L R L C ++V+DEADRMLDMGFE + KI+ + K G
Sbjct: 390 LERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSR 449
Query: 139 RQTLMFSATFPKQIQLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXX 318
RQT+MFSAT P ++ LA+ +L V L +G +G + + Q+V + + K+
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKK---WRRV 506
Query: 319 XXXXXXQRARPEEDQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRF 498
R P I++FV K+ + + + L + G+ ++HG ++Q +RE A+ +
Sbjct: 507 EEILESNRFSPP----IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQL 562
Query: 499 RTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFND 678
R ILVAT +A RG+DIP+V V+N+++ +E+Y HRIGRTGR G G A +F
Sbjct: 563 RNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGP 622
Query: 679 TNRGLARDLVELLV-EAKQDVPNWL 750
+ + DL LL AK +P+ L
Sbjct: 623 EDTDVYYDLRVLLSRSAKAHIPDEL 647
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 129 bits (312), Expect = 4e-31
Identities = 78/247 (31%), Positives = 131/247 (53%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
M+ R + D + VLDEAD ML GF+ QI I + +P T Q ++ SAT P+ +
Sbjct: 151 MIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQL--LPPTA--QVVLLSATMPQDV 206
Query: 181 QLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEED 360
+ F+ + + + V + T E I Q V V++ + + +A
Sbjct: 207 LEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQA----- 261
Query: 361 QLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVA 540
++F T++ D L E L + + V+S+HGD +Q +R+ + FRTG + IL+ T +
Sbjct: 262 ---VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLL 318
Query: 541 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLV 720
ARG+D+ V VIN+DLP++ E Y+HRIGR GR G GV+ +F + + + R++ +
Sbjct: 319 ARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYN 378
Query: 721 EAKQDVP 741
+++P
Sbjct: 379 THIEEMP 385
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 127 bits (306), Expect = 2e-30
Identities = 76/247 (30%), Positives = 130/247 (52%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
M+ R + + + L+LDEAD +L+ GF+ QI I + P T Q ++ SAT P+ +
Sbjct: 153 MIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYR-YLPPGT---QVVVVSATLPQDV 208
Query: 181 QLLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEED 360
+ F N V + V R T E + Q + V++ + + +A
Sbjct: 209 LEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQA----- 263
Query: 361 QLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVA 540
++F +++ D L E + + VTS+HG+ Q+ER+ ++ FR G + +L+ T +
Sbjct: 264 ---VIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIW 320
Query: 541 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLV 720
ARG+D+ V VIN+DLP++ E Y+HRIGR+GR G GVA +F + + + RD+ +
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYS 380
Query: 721 EAKQDVP 741
++P
Sbjct: 381 TVIDEMP 387
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 126 bits (305), Expect = 3e-30
Identities = 76/211 (36%), Positives = 117/211 (55%)
Frame = +1
Query: 22 ALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDF 201
+L + ++L++DEADR+LDM F P I KI++ +P ER+TL+FSAT +++ L +
Sbjct: 186 SLKNLKYLIMDEADRLLDMDFGPIIDKILK--IIPH--ERRTLLFSATMTSKVEKLQRAS 241
Query: 202 LYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFV 381
L+ V +AV ST + + Q+ ++ K ++ I++F
Sbjct: 242 LHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNS---------IIIFA 292
Query: 382 ETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIP 561
T +L L + G+ +HG +Q R AL +F++G LVAT VAARGLDIP
Sbjct: 293 RTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIP 352
Query: 562 HVRHVINFDLPSDVEEYVHRIGRTGRMGNLG 654
V VIN+D+P+D + Y+HR+GRT R G G
Sbjct: 353 LVDVVINYDIPTDSKAYIHRVGRTARAGRAG 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 124 bits (300), Expect = 1e-29
Identities = 76/244 (31%), Positives = 126/244 (51%)
Frame = +1
Query: 19 VALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQD 198
++ + V+DEADR+ + GF Q I+ T + +FSAT P +++ LA+
Sbjct: 185 LSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKS---LFSATIPSRVEELAKV 241
Query: 199 FLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVF 378
+ + + VG + +++I Q++++V D + R +++F
Sbjct: 242 VTVDPIRIIVGLKDAATDSIDQRLLFVGS-DTSKIVILRQMISNGELKPR------VVIF 294
Query: 379 VETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDI 558
V+ + A L L V IHG+ Q +RE+AL +FR G+ +L+AT + ARG+D
Sbjct: 295 VQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDF 354
Query: 559 PHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDLVELLVEAKQDV 738
V+ VINFD P V Y+HRIGRTGR GN G A +FF + + + ++ + +V
Sbjct: 355 HGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEV 414
Query: 739 PNWL 750
PNW+
Sbjct: 415 PNWV 418
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 111 bits (268), Expect = 8e-26
Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Frame = +1
Query: 37 RHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYN-- 210
R LV+DEADR+L++GFE ++R+I++ +P RQTL+FSAT +++ LA+ L
Sbjct: 238 RSLVIDEADRILEIGFEDEMRQIMKI--LPSEN-RQTLLFSATQTTKVEDLARISLKPGP 294
Query: 211 -YVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVET 387
YV + G+ ST E + Q V VD DKR ++ ++VF+ +
Sbjct: 295 LYVNVDSGKPTSTVEGLEQGYVVVDS-DKRFLLLFSFLKRNLKKK--------VIVFMSS 345
Query: 388 KKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHV 567
+ E L PV +HG + Q+ R + F + IL+ T VAARGLDIP V
Sbjct: 346 CASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAV 405
Query: 568 RHVINFDLPSDVEEYVHRIGRTGRMGNLGVATS 666
++ +D P D +Y+HR+GRT R G G S
Sbjct: 406 DWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKS 437
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 108 bits (259), Expect = 1e-24
Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 6/224 (2%)
Frame = +1
Query: 25 LDHCRHLVLDEADRMLDMGFEPQIRKIVECHT-MPKTGERQTLMFSATFPKQI-QLLAQD 198
L + LV+DEADR+L F + +C + +P + +RQTL+F+AT I QL Q
Sbjct: 151 LRRIKFLVMDEADRLLSPTFADDLD---DCFSVLPASEDRQTLLFTATVTDAIRQLKYQP 207
Query: 199 FLYNYVFLAVGRVG----STSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQL 366
N L + V S + Q ++V + ++ +++
Sbjct: 208 QKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSA------ 261
Query: 367 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 546
++FV + A+ + L VT +H + QRER ++L RFR ILVAT VA+R
Sbjct: 262 -IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASR 320
Query: 547 GLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFND 678
GLDIP V+ VINFDLP D ++Y+HR+GRT R G G + S +
Sbjct: 321 GLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE 364
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 102 bits (244), Expect = 6e-23
Identities = 69/215 (32%), Positives = 112/215 (52%)
Frame = +1
Query: 43 LVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFL 222
+V+DEADRML+ GF ++ +I++ PK+ RQT++FSAT ++ L + L V +
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQA--CPKS--RQTMLFSATMTDKVDDLIRLSLNRPVRV 464
Query: 223 AVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVETKKGAD 402
V +T++ +TQ+ V V +R + + ++F +K A
Sbjct: 465 FVDNKKTTAKLLTQEFVRV--RPQRELLRPAMLIYLCKELFH----RRTIIFFRSKAFAH 518
Query: 403 QLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVIN 582
++ T IHG +Q +R AL FR G+ L+AT VA+RG+DI + VIN
Sbjct: 519 KMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVIN 578
Query: 583 FDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 687
++ P+ E Y+HR+GRT R G G A + + +R
Sbjct: 579 YEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDR 613
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 98.7 bits (235), Expect = 8e-22
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 2/213 (0%)
Frame = +1
Query: 37 RHLVLDEADRMLD-MGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNY 213
+H VLDE D++L+ + I+++ T P ++Q +MFSAT +I+ + + F+ N
Sbjct: 199 KHFVLDECDKLLESVDMRRDIQEVFRA-TPP---QKQVMMFSATLSNEIRPICKKFMQNP 254
Query: 214 VFLAVG-RVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVETK 390
+ + V T + Q V ++E K Q +++FV++
Sbjct: 255 LEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQ---------VVIFVKSV 305
Query: 391 KGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVR 570
A++L+ L +P IHG Q ER + F+ I VAT V RG+DI V
Sbjct: 306 SRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVN 365
Query: 571 HVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 669
VIN+D+P + Y+HR+GR GR G G+A +F
Sbjct: 366 IVINYDMPDSPDSYLHRVGRAGRFGTKGLAITF 398
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 96.3 bits (229), Expect = 4e-21
Identities = 48/112 (42%), Positives = 66/112 (58%)
Frame = +1
Query: 370 LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 549
LVFV TK + + E L GY V+ I+G +Q R + + FR G+T +LV T VA+RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 550 LDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNRGLARDL 705
+DIP + +VIN+D P + +VHR+GRT R G G A S + G DL
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDL 461
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +1
Query: 16 RVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
++ L ++V DEADR+ +MGF Q+ +I+ H +P + RQTL+FSAT P+ +
Sbjct: 208 KLELSSIEYVVFDEADRLFEMGFAAQLTEIL--HALPTS--RQTLLFSATLPRTL 258
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 95.5 bits (227), Expect = 7e-21
Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 4/210 (1%)
Frame = +1
Query: 43 LVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFL 222
L+LDEADR+LDMGF + IV ++P RQT++FSAT K ++ LA+ L N F+
Sbjct: 189 LILDEADRILDMGFRTTLDAIVS--SLPV--HRQTMLFSATQTKSVKDLARLSLQNPDFI 244
Query: 223 AVGR--VGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVETKKG 396
+V ST N+ Q + V +K + +VF+ + K
Sbjct: 245 SVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLKFKT---------IVFLSSCKQ 295
Query: 397 ADQLEEYLYSQ--GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVR 570
+ E G + +HG + Q R + +F + + +L T + ARGLD P V
Sbjct: 296 VRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVD 355
Query: 571 HVINFDLPSDVEEYVHRIGRTGRMGNLGVA 660
VI D P DV+ Y+HR+GRT R G A
Sbjct: 356 WVIQLDAPEDVDTYIHRVGRTARYNRSGNA 385
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 93.9 bits (223), Expect = 2e-20
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 8/219 (3%)
Frame = +1
Query: 46 VLDEADRMLDM-GFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFL 222
VLDEAD MLD G Q +I H +P+ Q ++FSATF ++++ A+ F N +
Sbjct: 259 VLDEADNMLDQQGLGDQSMRIK--HLLPRN--TQIVLFSATFSERVEKYAERFAPNANEI 314
Query: 223 AVGRVGSTSENITQKVV-WVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVETKKGA 399
+ + E I Q + E K + Q ++F + K A
Sbjct: 315 RLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQS---------IIFCKKKDTA 365
Query: 400 DQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVI 579
+++ + + G+ V + G+ +R+ + FR G + +LV T V ARG+D+ V V+
Sbjct: 366 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 425
Query: 580 NFDLP------SDVEEYVHRIGRTGRMGNLGVATSFFND 678
N+D+P D + Y+HRIGRTGR G +GV+ +F +D
Sbjct: 426 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 464
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 92.7 bits (220), Expect = 5e-20
Identities = 68/230 (29%), Positives = 100/230 (43%), Gaps = 1/230 (0%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQI 180
+ +G C V+DEAD++L F P I +++ PK RQ ++SATFP +
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLS--YFPK--NRQISLYSATFPLIV 231
Query: 181 QLLAQDFLYN-YVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEE 357
+ L Y + + T +TQ +VDE K Q
Sbjct: 232 KNFMDKHLNKPYEINLMDEL--TLRGVTQYYAFVDESQKVHCLNTLFSKLQINQS----- 284
Query: 358 DQLILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 537
++F + + L + + GY H Q R FR G LV + +
Sbjct: 285 ----IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDL 340
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNDTNR 687
RG+DI V VINFD P + E Y+HRIGR+GR G+ G+A SF + +R
Sbjct: 341 LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADR 390
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 92.3 bits (219), Expect = 7e-20
Identities = 67/209 (32%), Positives = 96/209 (45%), Gaps = 4/209 (1%)
Frame = +1
Query: 46 VLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFL---YNYV 216
+LDEADR++DMGF I I E T KT + L FSAT P ++ + + L + +
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKT---RKLCFSATMPPKVSNVFRGILGTDFKLI 249
Query: 217 FLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILVFVETKKG 396
T E + Q V+ ++DK Q I+VF+ T
Sbjct: 250 NCLDPNEPPTHERVPQFVIET-KLDK----VFSSSLSLLQQLTSSNPSSRIIVFLPTISM 304
Query: 397 ADQLEEYLYSQ-GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRH 573
D + L + P +H +R FR Q+ IL AT V ARG+D P++
Sbjct: 305 VDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQ 364
Query: 574 VINFDLPSDVEEYVHRIGRTGRMGNLGVA 660
V+ PS+ ++Y+HRIGRTGR G G A
Sbjct: 365 VVQITGPSNTDDYIHRIGRTGRAGKTGEA 393
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 91.9 bits (218), Expect = 9e-20
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Frame = +1
Query: 43 LVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLLAQDFLYNYVFL 222
LVLDEADR+L ++ K++E P +RQT +FSATF + +Q Q N
Sbjct: 272 LVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQ---QRLKKNMKGN 328
Query: 223 AVGRVGSTSENITQKVVWVDE---MDKRSFXXXXXXXXXXXQRARPEEDQLILVFV---- 381
+ S EN+ ++V + + +D P E L L ++
Sbjct: 329 ITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY 388
Query: 382 --ETKKGADQLEE------YLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 537
+T A+ +E+ +L P +H +Q++R +L +F+ +LV T V
Sbjct: 389 PGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDV 448
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVA 660
AARG+DIP V HVI++ +P + YVHR GRT R GV+
Sbjct: 449 AARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVS 489
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 83.4 bits (197), Expect = 3e-17
Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 4/224 (1%)
Frame = +1
Query: 19 VALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQ-LLAQ 195
++ H L+LDEAD ++DMGF+ ++ I+ +PK +R+T +FSAT + L
Sbjct: 150 ISSKHLEILILDEADTLIDMGFQRTLQSIIS--QLPK--QRRTGLFSATMNDTVSSFLKI 205
Query: 196 DFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLILV 375
L N V ++V + T + + + E + +V
Sbjct: 206 AGLRNSVRVSVTVTSKKIDTRTPSSLAIQSL----VIPPIYKVQCMIHLLCTIEYEKAIV 261
Query: 376 FVETKKGADQLEEYL--YSQGYPVTSIHGDRNQREREDALRRFR-TGQTPILVATAVAAR 546
F + + Y + + ++HG + Q R +F+ + + +L T +A+R
Sbjct: 262 FFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASR 321
Query: 547 GLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFND 678
GLDIP+V V+ D P D + + HR GR GR G GVA ND
Sbjct: 322 GLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLND 365
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 68.9 bits (161), Expect = 7e-13
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Frame = +1
Query: 367 ILVFVETKKGADQLEEYL------YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVA 528
IL FV++ + A +L L +Q + ++ ER+ + RF TG +LV
Sbjct: 434 ILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVC 493
Query: 529 TAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVA 660
+ + ARG+D+ + ++VIN+D P V YVHRIGRT R G G A
Sbjct: 494 SDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFA 537
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 22 ALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPK 129
+L H R++V+DEADR+LD F+ + ++ + PK
Sbjct: 282 SLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPK 317
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = +1
Query: 439 VTSIHGDRNQREREDALRRFRTGQ---TPILVATAVAARGLDIPHVRHVINFDLPSDVEE 609
V +HG +Q+ R L F + + + IL+ T VAARGLD+P+V V+ +D P ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 610 YVHRIGRTGRMGNLGVATSF 669
Y+HRIGRT R G+ G A F
Sbjct: 530 YLHRIGRTARAGHNGAAIMF 549
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Frame = +1
Query: 37 RHLVLDEADRMLDMGFEPQIRKIV-----ECHTMPK----TGERQTLMFSATFPKQIQLL 189
R +VLDE DR++DMGFE + KI+ + + K + T++ SAT ++ L
Sbjct: 296 RWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRL 355
Query: 190 AQDFLYNYVFLAVGRVGSTSENITQ 264
+ L + ++L V T++ +Q
Sbjct: 356 SDSALKDALYLKSSIVEETNDGYSQ 380
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 64.5 bits (150), Expect = 2e-11
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Frame = +1
Query: 151 MFSATFPKQIQLLA-QDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXX 327
+ SATFP+Q++++A Q F N+ L + ENI ++ D F
Sbjct: 1352 LLSATFPRQLEMVARQTFCTNFYVLR--ETSTARENI---FYFLHPYDNTEFLLDLRTLM 1406
Query: 328 XXXQRARPEEDQLILVFVETKKGADQLEEYLYSQGY----PVTSIHGDRNQREREDALRR 495
+ E D ++F TKK + + L+ VT GD + ER+
Sbjct: 1407 KRTKVF--EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDA 1464
Query: 496 FRT--GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 669
FR G+T I++AT G++ VR V+++ LP+ +YV GR GR G +A F
Sbjct: 1465 FRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALF 1524
Query: 670 F 672
+
Sbjct: 1525 Y 1525
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 64.5 bits (150), Expect = 2e-11
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Frame = +1
Query: 151 MFSATFPKQIQLLA-QDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXX 327
+ SATFP+Q++++A Q F N+ L + ENI ++ D F
Sbjct: 1352 LLSATFPRQLEMVARQTFCTNFYVLR--ETSTARENI---FYFLHPYDNTEFLLDLRTLM 1406
Query: 328 XXXQRARPEEDQLILVFVETKKGADQLEEYLYSQGY----PVTSIHGDRNQREREDALRR 495
+ E D ++F TKK + + L+ VT GD + ER+
Sbjct: 1407 KRTKVF--EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDA 1464
Query: 496 FRT--GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 669
FR G+T I++AT G++ VR V+++ LP+ +YV GR GR G +A F
Sbjct: 1465 FRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALF 1524
Query: 670 F 672
+
Sbjct: 1525 Y 1525
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +1
Query: 541 ARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 669
ARGLD +V V+NFD+PS+ + Y+HRIGRT R G G A SF
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSF 429
Score = 47.6 bits (108), Expect = 2e-06
Identities = 49/194 (25%), Positives = 84/194 (43%)
Frame = +1
Query: 4 LARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQ 183
+A G + LD + LV+DEAD ML G+ ++ + ++P+ Q+ + SAT K I
Sbjct: 155 VASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTL--SRSLPR--GTQSFLMSATLSKNIA 210
Query: 184 LLAQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQ 363
L + N LAV + S +TQ VV E DK F + +
Sbjct: 211 SLQKLVCRNPFILAV-KDKEASGKLTQYVVKCSEQDK--FLLAYILLKLRLIKGK----- 262
Query: 364 LILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAA 543
IL+FV +L+ +L G ++ + R L ++ G I++AT +
Sbjct: 263 -ILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESG 321
Query: 544 RGLDIPHVRHVINF 585
+I + + ++F
Sbjct: 322 MMGEIEELENNVDF 335
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 469 REREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGN 648
R ++D L +F+TG+ +L+ATAVA G+D+P VI F++ V +YV GR M +
Sbjct: 410 RRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMAS 469
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 48.4 bits (110), Expect = 1e-06
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Frame = +1
Query: 355 EDQLILVFVETKKGADQLEEYL---YSQGYPVTSIH-------GDRNQREREDALRRFRT 504
+D I++FVE + A+++ +L Y P I +Q+ + + +++F+
Sbjct: 431 KDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQK 490
Query: 505 GQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 639
G+ L+AT++ GLDI V +I +D + + R+GRTGR
Sbjct: 491 GEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 463 NQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGR 639
NQ ++++ + +FR G LVAT++ GLDI +I +D S + R+GRTGR
Sbjct: 516 NQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGR 574
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 370 LVFVETKKGADQLEEYLYSQ-GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAAR 546
+++ ++ +Q+ L + G H + ER+ +++G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 547 GLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN 675
G+D VR VI+ P +E Y GR GR G F++
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 430 GYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHV 567
G ++ G+ N ERE ++ FR + P+LV V G DIP++
Sbjct: 289 GIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNI 334
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 34.3 bits (75), Expect = 0.019
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +1
Query: 367 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP---ILVATAV 537
+L+F + + D L +YL +GYP + G R ++ F +P L++T
Sbjct: 709 VLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRA 768
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 645
G+++ VI FD + + + + R R+G
Sbjct: 769 GGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIG 804
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 517 ILVATAVAARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 669
+ VA RGL +P + H+ + Y H GR G MG G +F
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNF 524
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 451 HGDRNQREREDALRRFRTGQTPILVATAVAARGLDIPHVRHVINFD-LPSDVEEYVHRIG 627
H N+R R+ FR GQ +++AT + G+++P V D L + + G
Sbjct: 1229 HSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFHQAAG 1288
Query: 628 RTGRMG 645
R GR G
Sbjct: 1289 RAGRRG 1294
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +1
Query: 367 ILVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTP---ILVATAV 537
+L+F + + + L EY+ +GY + G R ++ F +P L++T
Sbjct: 723 VLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRA 782
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMG 645
G+++ VI FD + + + + R R+G
Sbjct: 783 GGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIG 818
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 153 HKSLTFASLGHRVALYNLTDLWLKTHVQHAVGFVEYK 43
HKS+ F L VALYN++D+ L T + + V Y+
Sbjct: 368 HKSVRFEEL---VALYNVSDVCLITSTRDGMNLVSYE 401
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 373 VFVETKKGADQLEEYLYSQGYPVTSIHGDRNQRERE 480
+F T++ AD +LY Y +TS + D+ ERE
Sbjct: 1134 IFSMTQREADNFGRFLYEVLYDITSWYRDKILYERE 1169
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Frame = +1
Query: 361 QLILVFVETKKGADQLEEYL-YSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAV 537
+L+ ++TK+ D L + Y GY V +ER G+ ++AT
Sbjct: 569 RLVRQELKTKQKGDLLSKIQSYRAGYTV---------QERRKIESEMFNGKLYGIIATNA 619
Query: 538 AARGLDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVA 660
G+DI + VI P + + GR GR +A
Sbjct: 620 LELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRNKSSLA 660
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 1 MLARGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTM 123
++ + +V L+ C +++LD + + G Q +K +E H +
Sbjct: 1161 LITKKKVILEQCEYVILDILNFLKFSGIPTQSKKRLEVHML 1201
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 343 ARPEEDQLILVFVETKKGADQLEEYLYSQGYPV-TSIHGDRNQREREDALRR 495
AR E + + K GA Q E + Q T + R +ER++ LRR
Sbjct: 486 ARHELGESFFDWEAAKVGAPQSREQIQKQRQKAKTKLENQRRDKERQEELRR 537
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 499 RTGQTPILVATAVAARGLDIPHVRHVINFDLPSDVEEY 612
++ TP+++ VA + L+I V H N DL ++E+Y
Sbjct: 1436 KSENTPLILNFMVAIQHLNIQAVNHAYN-DLLIEMEDY 1472
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 478 EDALRRFRT---GQTPILVATAVAARGLDIPHVRHVIN 582
ED ++ F + G +VAT VA + IP++R+V++
Sbjct: 714 EDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,914
Number of Sequences: 5004
Number of extensions: 62434
Number of successful extensions: 257
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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