Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k05
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      244   9e-67
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.3  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  244 bits (596), Expect = 9e-67
 Identities = 131/248 (52%), Positives = 161/248 (64%), Gaps = 1/248 (0%)
 Frame = +1

Query: 10   RGRVALDHCRHLVLDEADRMLDMGFEPQIRKIVECHTMPKTGERQTLMFSATFPKQIQLL 189
            +GRV     + LVLDEADRMLDMGF P I K+V+  TM   GERQTLMFSATFP ++Q L
Sbjct: 340  KGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHL 399

Query: 190  AQDFLYNYVFLAVGRVGSTSENITQKVVWVDEMDKRSFXXXXXXXXXXXQRARPEEDQLI 369
            A+ FL NY+FLAVG VG    ++ Q    V    K+                        
Sbjct: 400  ARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGG-----T 454

Query: 370  LVFVETKKGADQLEEYLYSQGYPVTSIHGDRNQREREDALRRFRTGQTPILVATAVAARG 549
            LVFVE KK AD +  +L    YP TSIHGDR QR+RE+AL  F++G+  ILVATAVAARG
Sbjct: 455  LVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARG 514

Query: 550  LDIPHVRHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFN-DTNRGLARDLVELLVEA 726
            LDI +V HVIN+DLP  ++EYVHRIGRTGR+GN G ATSFF+ + +  L  DLV +L +A
Sbjct: 515  LDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQA 574

Query: 727  KQDVPNWL 750
             Q VP+W+
Sbjct: 575  NQSVPDWM 582


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 121 SCGTLQSYGSVAQNPCPTCGRLRRVQDGD 35
           +C TLQS   + ++     GRL+R   GD
Sbjct: 35  NCETLQSEVHITKDEYDEIGRLKRTCSGD 63


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 121 SCGTLQSYGSVAQNPCPTCGRLRRVQDGD 35
           +C TLQS   + ++     GRL+R   GD
Sbjct: 35  NCETLQSEVHITKDEYDEIGRLKRTCSGD 63


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 192 SGFLIQLCVPCC 227
           S +LIQ+ +PCC
Sbjct: 242 SYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 192 SGFLIQLCVPCC 227
           S +LIQ+ +PCC
Sbjct: 242 SYYLIQIYIPCC 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,285
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)