Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k03
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0530 + 24696399-24697592 29 3.1
02_05_0032 - 25221039-25221138,25221618-25222135 29 3.1
05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484... 29 4.1
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 29 4.1
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654 29 5.5
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 7.2
06_01_0032 + 343157-343507 28 7.2
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 28 7.2
03_05_1156 - 30814037-30814190,30814277-30815166 28 7.2
01_06_1623 - 38716606-38717424 28 7.2
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 28 9.6
>11_06_0530 + 24696399-24697592
Length = 397
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 480 LKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 605
L N++ +I P L+S+ LRN + +PP+PA +VY
Sbjct: 180 LSHNSLSGEI-PKLVSSPLVHLDLRNNRLTGGVPPLPATLVY 220
>02_05_0032 - 25221039-25221138,25221618-25222135
Length = 205
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 330 TLKPIGRDNDDLVSTVLLHLPQPKSK-DVQTLDIGKKLVELGFAKASFPKELKKNTIESQ 506
TL +G D+DD T + PQP S+ ++ +D+G G A A+ + + +
Sbjct: 19 TLLRLGGDDDDDACTKVTTTPQPVSECELPMIDVGCLTAPTGAAAAAAVGQQHQAEERAA 78
Query: 507 IAPALLSAEAQ 539
A A+ +A A+
Sbjct: 79 CAAAIAAAAAE 89
>05_07_0231 -
28547468-28547636,28547767-28547839,28548382-28548463,
28548880-28548970,28549042-28549118,28549493-28549534,
28550101-28550108,28550404-28550534,28551358-28551385,
28551580-28551689,28551843-28551988,28552670-28552711,
28552824-28552832,28552888-28553032,28553596-28553687
Length = 414
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 324 QVTLKPIGRDNDDLVSTVLLHLPQP 398
+V LKP+ + DL++TVLL LP P
Sbjct: 63 RVMLKPLEDPHVDLIATVLLQLPLP 87
>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 650 SQEVTATVKIYHQKCFNRNKEFNINSIQV 736
S AT ++ HQ FN+ KEF N I V
Sbjct: 1027 SDNSVATRRLLHQAIFNKRKEFQWNKITV 1055
>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
Length = 381
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 210 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 347
+ LPL KP P +L +E G +NW G T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 341 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 252
WL H AP+N F+P + +PT FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425
>06_01_0032 + 343157-343507
Length = 116
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 757 VCTCLGFDLNGINIKFFVPIKALLVVNFNSC 665
VC CL + N + + VP+ L++N+ C
Sbjct: 77 VCVCLAINANLLGLNLDVPVDLSLLLNYCGC 107
>04_03_0813 -
19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 423 DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 587
D+ LV+ G AK E N ++ Q+ L +A+ Q K + IW+ PP+
Sbjct: 321 DLALDLVQNGLAKYV---EWSANVLDPQLKTKLRNADLQVKKEQLRIWTGFKPPV 372
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 IMMI*FLLYYC-IYLSLRVKMFKHWILVKNWWSLDLQ 459
I+M F +Y IY R KM +W+L + +DL+
Sbjct: 250 IIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLE 286
>01_06_1623 - 38716606-38717424
Length = 272
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 156 YAGVQHSPVRVLVNHKAPIYLP 221
YA SPVR++VN+K+P +P
Sbjct: 196 YAAPDMSPVRIVVNNKSPSEIP 217
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 408 DVQTL-DIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPP 584
D TL D+ +LVE G AK E N ++ L +AE QAK + IW+ PP
Sbjct: 313 DGDTLKDLALELVENGLAKYV---EWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPP 369
Query: 585 I 587
+
Sbjct: 370 V 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,661,654
Number of Sequences: 37544
Number of extensions: 429838
Number of successful extensions: 1072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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