Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k03
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical pr...    34   0.099
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.7  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   6.5  
U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...    28   8.6  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    28   8.6  

>Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical
           protein F32A11.1 protein.
          Length = 319

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
 Frame = +3

Query: 27  AVYALATAGLAISVHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKA 206
           A+  +  AG+ I +   R   KF   +++P  FIR    LKG    V  S   + V H+ 
Sbjct: 44  AIVGVGLAGVIIYLRNSRLFHKFQHVNQIPKDFIRKELELKGRVREVLPSG-ELRVEHEP 102

Query: 207 PIYLPLWHSSKPP----LPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG----RDNDD 362
            + +P     K      L ++L G+E+         + +A+  ++T KP+     +D + 
Sbjct: 103 IMKIPFLPKRKNVDTGLLNLRLAGVELSQSGQ----QFLAKDLRLTNKPVTFTVIKDVEG 158

Query: 363 LVSTVLLHLPQPKSKDVQTLDIGKKLVELGFAKASFPKELKK----NTIE--SQIAPALL 524
               V   +   ++   +T ++  ++V  G+A+   P ++K      TI   S++   LL
Sbjct: 159 APDAVDADVTVKRTAFGRT-NLNLEVVRRGYARVPAPDQVKHLKSLQTIPAYSRLISRLL 217

Query: 525 SAEAQAKSLRNGIWSEN 575
            +E  A     G+W  +
Sbjct: 218 MSEKVADRRGVGVWERD 234


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 420 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNG 560
           + IGKK  E    K    KELKKN  +   A  +    A+AK  + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 420 LDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNG 560
           + IGKK  E    K    KELKKN  +   A  +    A+AK  + G
Sbjct: 443 VSIGKKFDEAQINKLQTEKELKKNAQKQANAAKMREKRAKAKEEQEG 489


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 396 PKSKDVQTLDIGKKLVELGFAKASFPKELKKNTIESQIAPALLSAEAQAKSLRNGIWS 569
           P     + +++ + LVE G A   F  E       S    ALLSAE +AK  +  IW+
Sbjct: 616 PDGNTSRAINLSEALVENGLASLHFTAE------RSGHYNALLSAENKAKKAKKNIWA 667


>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
 Frame = +3

Query: 264 GIEVVSGNAVNWLECVARGQQVTLKPIGRDNDDLVSTVLLHLPQP-KSKDVQTLDIGKKL 440
           G+   S  A+     +A+  +   + + +D   LV+   +   +P K   ++ +DI K+L
Sbjct: 263 GLREASQVAILNANYMAKRLENDYRIVYKDEQGLVAHEFIMDCKPFKKHGIEVVDIAKRL 322

Query: 441 VELGFAKASF-----------PKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 587
           ++ GF   +            P E +      ++  ALLS   + + + NG   ++L P+
Sbjct: 323 MDYGFHSPTMSWPVHDCLMIEPTESEDKAEMDRLVEALLSIREEIRQVENGSLDKHLNPL 382


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
            protein R12C12.1a protein.
          Length = 979

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
 Frame = +3

Query: 264  GIEVVSGNAVNWLECVARGQQVTLKPIGRDNDDLVSTVLLHLPQP-KSKDVQTLDIGKKL 440
            G+   S  A+     +A+  +   + + +D   LV+   +   +P K   ++ +DI K+L
Sbjct: 798  GLREASQVAILNANYMAKRLENDYRIVYKDEQGLVAHEFIMDCKPFKKHGIEVVDIAKRL 857

Query: 441  VELGFAKASF-----------PKELKKNTIESQIAPALLSAEAQAKSLRNGIWSENLPPI 587
            ++ GF   +            P E +      ++  ALLS   + + + NG   ++L P+
Sbjct: 858  MDYGFHSPTMSWPVHDCLMIEPTESEDKAEMDRLVEALLSIREEIRQVENGSLDKHLNPL 917


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,109,401
Number of Sequences: 27780
Number of extensions: 389990
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)