Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4k01
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0539 - 10408398-10409552 30 1.5
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255 30 1.5
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 29 2.6
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 3.4
05_02_0135 - 6965294-6965875 29 4.5
08_01_0655 + 5646567-5646650,5646675-5647697,5648227-5648382,564... 28 6.0
09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341 28 7.9
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 28 7.9
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993 28 7.9
03_05_0683 - 26703486-26703539,26703639-26703797 28 7.9
>09_02_0539 - 10408398-10409552
Length = 384
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 202 ENSSACGED-APVILKNFNSERQAVDSNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFL 378
ENS++ AP++L ++N + +S+ D+D + G D + F +D ++ +
Sbjct: 9 ENSTSLDHKLAPMLLFHYNYDMSLEESDDDQDNEESGDD--EDVSDEDEFTEASDDEESM 66
Query: 379 SESELKDFTNQYISITPISTNSSDHDEAKHE 471
E++ + T S+N +D D A E
Sbjct: 67 EETDDDE--------TDASSNDNDDDTANDE 89
>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
Length = 863
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 280 NTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSE-SELKDFTNQYISITPISTNSSDHD 456
N+D +G+S + EQ T P N FL E EL +S P SD
Sbjct: 592 NSDVMFPAEGVSKMQALEQLTGLLPFNQPVSFLKELGELTKLRVLAVSWIPDHVRDSDEA 651
Query: 457 EAKHEYDF 480
A+HE +
Sbjct: 652 HAEHEKSY 659
>02_05_1056 -
33804717-33804871,33805352-33805418,33805508-33805576,
33806414-33806548,33806609-33806680,33807281-33807375,
33807778-33807859,33807949-33807999,33808107-33808187,
33808534-33808575,33808705-33808803,33809044-33809115,
33809166-33809270
Length = 374
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 175 DSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDE 297
D + T LE +S CG ++ + LK E QA+ +K E
Sbjct: 220 DFNKDLTYLEPASKCGGESQIQLKELAEEMQAITKGLEKVE 260
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 169 DSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDEDTDGISIISDCEQDTA- 345
+SDS +S + E+ AP + K ++ DS +D D D + I +
Sbjct: 217 ESDSSDSDSDSESDEDVPTKAPAVAKKKEESSESSDSESDSDSDDEAAKTIIPAKAAAVK 276
Query: 346 -FEPNNDQQQFLSESE 390
E ++D SESE
Sbjct: 277 KEEESSDSSDSDSESE 292
>05_02_0135 - 6965294-6965875
Length = 193
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 SDSDSGESWTLLENSSACGEDAPVILKNFNSERQA-VDSNTDKDEDTDGISIISDCEQDT 342
+D D G W +++S + + + +S+ + D +D D D+D I + D
Sbjct: 97 NDDDDGSDWDSVDDSDSDHDSDSDHDHDSDSDHDSDFDRGSDSDHDSDSNHDIDGDDNDD 156
Query: 343 AFEPNNDQQ 369
+ NND +
Sbjct: 157 DDDDNNDDE 165
>08_01_0655 +
5646567-5646650,5646675-5647697,5648227-5648382,
5648499-5648529,5648636-5648808
Length = 488
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 253 NSERQAVDSNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSESEL 393
N S D D D+D +S S CE +D++Q + E+
Sbjct: 266 NGSEDGEGSLNDSDYDSDAVSDASTCEYSEIANNYDDEKQLVEHDEV 312
>09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341
Length = 353
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 157 ADHSDSDSGESWTLLENSSACGEDAPVILKNFNSERQA 270
++HS +D E+ + C P + FNSE +A
Sbjct: 103 SEHSGTDDSEAQSAPSQDFLCSTQVPYLTLTFNSEEEA 140
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 568 HYPTL*YLEQYSIFCFFCEHMFCACYYHLKNHIHVLLHHDHYYWL 434
H+ L Y + + +CF CE CY+ H V++ ++ Y++
Sbjct: 172 HWVALVYKKPHVAYCFACEE----CYFIRTEHFGVVMDNEDDYFI 212
>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
Length = 678
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = +1
Query: 169 DSDSGESWTLLENSSACGEDAPVILKNFNSERQAVDSNTDKDEDTDGISIISDCEQDTAF 348
DSDS S T EN ED+P +N + +D + ++ + + D E
Sbjct: 381 DSDSTSSVTDQENHKLVLEDSP--NQNLGPQMSQMDEQPHRSQNAREVPLALDIEPPLLI 438
Query: 349 EPNNDQQQFLSESELKDFTN-QYISITPISTNSSDHDEAKHEY 474
++D L + D Q +S N+S D + EY
Sbjct: 439 SDSSDDDISLPGGNINDREEAQENGNLNLSQNASLEDPSVIEY 481
>03_05_0683 - 26703486-26703539,26703639-26703797
Length = 70
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 223 LHTPKNFQEASSFRRNQNRYGLLLIDPFLKSQKRSIILCLTLLFNSR*YFAG 68
LH K +E + ++NQ+++ + LI +KRS ++ T L + AG
Sbjct: 11 LHITKQKREDNQRKKNQSKWNIWLIHSVQSEKKRSCLVQATTLVPTNMISAG 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,683
Number of Sequences: 37544
Number of extensions: 262526
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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