Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4k01
         (677 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   1.7  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    24   3.8  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   5.1  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    24   5.1  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 236 TGASSPHAEEFSRSVQLSPESESLWSAIDR 147
           TGAS P AE  + S   +PE E L + I R
Sbjct: 97  TGASKPIAEPKAASATPAPELELLRATIQR 126


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 207 IFKKRPAFAGIRIAMVC 157
           I+ + P+ AG+ +AMVC
Sbjct: 381 IYPRLPSLAGVNMAMVC 397


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +1

Query: 193 TLLENSSACGEDAPVILKNFNSERQAVDSNTDKDE--DTDGISIISDCEQDTAFEPNNDQ 366
           T+    S  GE    I  N  + +       +  E  DT+G  ++ + EQ  A E   + 
Sbjct: 252 TIANLQSVIGESEQKIESNCATAQTLEQEAKELQERIDTEGGGVLGELEQQLAVESKKEA 311

Query: 367 QQFLSESELKDFTNQ 411
                 + +KD   Q
Sbjct: 312 TVAAERNTMKDSIGQ 326


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
           protein I protein.
          Length = 1340

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 EDAPVILKNFNSERQAVDSNTDKDEDTD-GISIIS 324
           ++  +++ NFNS+   VD     + +TD G+S+++
Sbjct: 34  QEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLN 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,732
Number of Sequences: 2352
Number of extensions: 11473
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)