Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j22
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    30   0.30 
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    27   2.8  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.4  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   6.4  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   8.5  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.5  

>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 273 QNRNNSNIIENKETYPTTPPVWFAESEDPIVTNAVQILTNT 395
           +N NN N+  N   YP  P V F    D    +   +LTN+
Sbjct: 225 KNLNNLNLTTNSHWYPCGPDVIFTNYSDEFYESYKSLLTNS 265


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 404 RQSCNKPGWDIAARAMQT 457
           RQ C KPG+DI   ++QT
Sbjct: 48  RQYCTKPGYDIYGNSVQT 65


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 653 ASIFNHLKWQVIFSFRVIFLSCHFLIFLC 567
           A I+N++    IFS  ++ ++  FLIFLC
Sbjct: 15  ARIYNYIPHPSIFSNAILGIAWLFLIFLC 43


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 647 IFNHLKWQVIFSFRVIFLSCHFLIF 573
           IF +L W + FSFR   + C F  F
Sbjct: 193 IFQNLGWLIRFSFRKSIICCLFTPF 217


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 327 VWWGMFPYSQ*Y*SYFGFDNNIN 259
           +WW +F   + Y  YFG   NI+
Sbjct: 374 IWWAIFIADKWYSMYFGLATNIH 396


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 91  IYTNLIKKGKLIKYVLYL 38
           +Y  LIK G+L++YV YL
Sbjct: 760 LYHCLIKSGRLVEYVSYL 777


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -1

Query: 202 F*YVNFFGFITKLFQCLKMFLTSKHSSNVNILLI*DNIYTNLIKKGKLIKY 50
           F Y+ F+G +  +FQ    ++    S++ N L +    Y +L   G  I Y
Sbjct: 391 FLYI-FYGMLDAIFQSYAYWIIGSLSNDTNKLAVYMGFYKSLQSAGAAITY 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,750
Number of Sequences: 5004
Number of extensions: 54512
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)