Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j22
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421...    29   2.9  
06_01_1143 - 9554338-9554983,9555004-9555746                           29   5.1  
03_02_0939 + 12571052-12571173,12571219-12571309,12571413-125715...    28   6.7  

>07_01_0567 -
           4214196-4214351,4214539-4214845,4215005-4215069,
           4215406-4215471,4215594-4215639,4215671-4216200
          Length = 389

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -3

Query: 434 YPNLVYYMIVSSLSVSEYLNSICHNWILTFCKPDWWCGGVCFLIL---NNIRVISVLIII 264
           YP   +   VS+ S+  +LN + H   +  C  D  C    FL++    N   ISV +II
Sbjct: 164 YPTDTFDRYVSAGSLRYFLNCVSHEQPMKICVQD--CEVNSFLVVFTRINQYTISVNMII 221

Query: 263 LTLFYIPLHLFVLIKIV 213
           L L  I L   V +KI+
Sbjct: 222 LALM-IVLTYIVHVKII 237


>06_01_1143 - 9554338-9554983,9555004-9555746
          Length = 462

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 583 KWQLRKMTLKEKMTCHLRWLKMLAVAXRMTWKLNI*RH 696
           KW  R +TL++++   L ++K L  A   +W  N+ RH
Sbjct: 28  KWDDRLITLEKRVRNRLMYVKDLMDAGSRSWNENLIRH 65


>03_02_0939 +
           12571052-12571173,12571219-12571309,12571413-12571512,
           12571726-12571807,12571897-12571953,12572632-12572713,
           12572792-12572884,12573984-12574047,12574161-12574246,
           12574329-12574430,12574526-12574609,12574885-12574945,
           12575010-12575091,12575173-12575250,12575867-12575931,
           12576108-12576185,12576278-12576450
          Length = 499

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 571 RKMRKWQLRKMTLKEKMTCHLRWLKMLAVAXRMTW 675
           R ++ W L   TLK  +T H+  ++ LAV+ R T+
Sbjct: 206 RTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTY 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,852
Number of Sequences: 37544
Number of extensions: 301695
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)