Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j22
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin con...    50   2e-06
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    28   7.9  

>Z79754-7|CAB02096.2|  387|Caenorhabditis elegans Hypothetical
           protein F25H2.8 protein.
          Length = 387

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
 Frame = +3

Query: 276 NRNNSNIIEN---KETYPTTPPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLR 443
           N  N  II     +E YP  PP+WF+ES+D P++  ++Q LT T+   N +++QV  L+ 
Sbjct: 41  NAENKGIIVTANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVS 99

Query: 444 ELCKLHGV 467
           +LC  + +
Sbjct: 100 DLCSFYNL 107


>AF537093-1|AAO85552.1|  387|Caenorhabditis elegans ubiquitin
           conjugating enzyme UBC-25 protein.
          Length = 387

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
 Frame = +3

Query: 276 NRNNSNIIEN---KETYPTTPPVWFAESED-PIVTNAVQILTNTQGRDNHVINQVGILLR 443
           N  N  II     +E YP  PP+WF+ES+D P++  ++Q LT T+   N +++QV  L+ 
Sbjct: 41  NAENKGIIVTANIQENYPRQPPIWFSESDDVPVIGMSLQRLTETEESTN-ILHQVHRLVS 99

Query: 444 ELCKLHGV 467
           +LC  + +
Sbjct: 100 DLCSFYNL 107


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 422 VYYMIVSSLSVSEYLNSICHNWILTFCKPDWWCGGVCFLILNNIRVISVLII 267
           +Y M ++ L VSE +  I + +   F     WC   CFLI   I ++S+L+I
Sbjct: 90  IYPMFLTVLMVSERIYCILYPFGKAFTNKKLWC--YCFLIA--IVLLSILLI 137


>Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical
           protein F31D4.7 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 278 VLIIILTLFYIPLHLFVLIKIV*MIFLICKFFWFYYKTI 162
           +L +I  LF IPL L VL     ++ +  KF WF  K +
Sbjct: 269 MLTMIFALFGIPLMLLVLQDFGKLLTITMKFPWFQTKRL 307


>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 263 LTLFYIPLHLFVLIKIV*MIFLICKFFW 180
           +TLFY    L V++ ++  +FLIC  F+
Sbjct: 37  MTLFYFRFLLDVILSVLVAVFLICGIFY 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,144,138
Number of Sequences: 27780
Number of extensions: 306323
Number of successful extensions: 924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)