Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j22
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   5.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.1  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 175 ITKLFQCLKMFLT 137
           ITK+FQC+  F T
Sbjct: 116 ITKIFQCITKFKT 128


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 477 GVLVLHVVCIALAAISQPGLLHDCLV 400
           G LV+ ++C      S   LLH C++
Sbjct: 94  GELVMGILCKKTLGTSAGSLLHICML 119


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 96  SYINKILTFELCLDVKNIFKH*NSFVIKPKKFTY*KYHSYNLY*N 230
           +Y+N++ T  L   + + F       I PK+  Y ++    LY N
Sbjct: 299 TYLNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYAN 343



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 279 RNNSNIIENKETYPTTPPVWFAESEDPIVTNAV 377
           +N   + + KETYP   PV F  S + I  N +
Sbjct: 165 QNLEELRDLKETYPFN-PVLFISSLENISLNGI 196


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 96  SYINKILTFELCLDVKNIFKH*NSFVIKPKKFTY*KYHSYNLY*N 230
           +Y+N++ T  L   + + F       I PK+  Y ++    LY N
Sbjct: 337 TYLNEVHTASLRKFILSAFDMARIIQITPKRIQYAQHKENELYAN 381



 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 279 RNNSNIIENKETYPTTPPVWFAESEDPIVTNAV 377
           +N   + + KETYP   PV F  S + I  N +
Sbjct: 203 QNLEELRDLKETYPFN-PVLFISSLENISLNGI 234


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 454 NYMEYQNPQT*IHYPCQYIQR 516
           NY  Y N    +HY   YI++
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQ 343


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -3

Query: 635 LKWQVIFSFRVIFLSCHFLIF 573
           ++W++  +  V+++ C+F I+
Sbjct: 205 IRWELAGTLAVVWIMCYFCIW 225


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -3

Query: 635 LKWQVIFSFRVIFLSCHFLIF 573
           ++W++  +  V+++ C+F I+
Sbjct: 258 IRWELAGTLAVVWIMCYFCIW 278


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 641 NHLKWQVIFSFRVIFLSC 588
           NH++W   F+     +SC
Sbjct: 507 NHIRWNSAFAIAPAVISC 524


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 641 NHLKWQVIFSFRVIFLSC 588
           NH++W   F+     +SC
Sbjct: 597 NHIRWNSAFAIAPAVISC 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,855
Number of Sequences: 438
Number of extensions: 4048
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)