Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j21
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 126 4e-30
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 91 2e-19
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 37 0.002
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 33 0.053
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 30 0.28
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 29 0.86
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.86
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 28 1.5
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 3.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 4.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 8.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.0
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 126 bits (303), Expect = 4e-30
Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Frame = +1
Query: 283 PSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKI 462
P+H +N+PALSPTM +G+I +++KK GDK+ GD+LCEIETDKA + FE +EGYLAKI
Sbjct: 51 PAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKI 110
Query: 463 LIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFK-DDSSPATPQKPASQDK 606
LI GTK VPVGK L + V ++ DVAA DF +DSS P + ++K
Sbjct: 111 LIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEK 159
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 90.6 bits (215), Expect = 2e-19
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Frame = +1
Query: 205 LLEHAQNQTVLSTP---QWTVQMRYY--SSLPSHIKV-NLPALSPTMESGSIVSWEKKEG 366
+L+H +Q V ++ +V+ RY+ S+L + +PALSPTME G+I W KEG
Sbjct: 1 MLKHYIHQCVKASSCKHSLSVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEG 60
Query: 367 DKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAF 546
D GD+L E+ETDKATM E + G LAK+LI G+ +PVGK + I+ ++++
Sbjct: 61 DSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGS-NIPVGKNIAIVADAEDNLKDL 119
Query: 547 KDFKDDSSPATPQKPASQDK 606
+ KD++S +S+++
Sbjct: 120 ELPKDEASSEEQSFSSSKEE 139
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 295 KVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPA 474
++ P ++ G++ W K+ G+ +++ + + +ETDK P+ G L + L+
Sbjct: 44 RIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKE 103
Query: 475 G 477
G
Sbjct: 104 G 104
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 32.7 bits (71), Expect = 0.053
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 331 SGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAG 477
SG+IV KEG K+ +GD++ + K + P G L + + G
Sbjct: 1122 SGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQG 1170
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 208 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSE 381
L Q Q +++ P W YY +P H + L T+ S WE++ G++ ++
Sbjct: 257 LRFTQRQILMNDPYWNRGF-YYDGVPPHTGMKLAREVATISYRSGPEWEQRFGNRRAD 313
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +1
Query: 223 NQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEI 402
N + +TP W V+ S+L + + + PAL P+ V KK+ +
Sbjct: 646 NSSAANTPSWGVRKARASALNARSEEDFPALPPSTSKRISVQLGKKQARPVDSWGSTPNT 705
Query: 403 ETDK--ATMGFETPEEGYLAKILIPAG 477
+++ TMG + G +L G
Sbjct: 706 SSNRNSNTMGVSKKKNGKKQTVLFHIG 732
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.7 bits (61), Expect = 0.86
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 193 VTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSP-TMESGSIVS 348
V+NK L HAQ + S P Q + + S PS + +++P T+E+G++ S
Sbjct: 177 VSNKSLPHAQQSIIRSFPDIQKQPKGFFSYPSS---TVSSIAPSTLEAGNLHS 226
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 106 RNQILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLP 285
++ L D + IRS ++ LA +V + LE + + V T QW +M + +
Sbjct: 1060 KSPFLGDDEAREIRSKQSQGWGDVLADARVYHNWLEILETRGVKKTVQWCEEMHLHYTTL 1119
Query: 286 SHIKVNLPALS 318
I+ N LS
Sbjct: 1120 QQIRQNRNELS 1130
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +1
Query: 301 NLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 480
N P T G +V + + G+ + G+ E+E K M E+G + I P +
Sbjct: 708 NDPTQLRTPSPGKLVRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVVQLIKQPGAS 767
Query: 481 KGVPVGKLLCIIVGD 525
+ G +L I+ D
Sbjct: 768 --LDAGDILGILTLD 780
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 367 DKLSEGD--LLCEIETDKATMGFETPEEGYLAKILIPAGTKGV 489
D+L G L + + DK + +ETP EGY +L+ A K V
Sbjct: 798 DQLQPGKVALFVDWQIDKFSFFYETPAEGY--NLLVEANEKSV 838
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 416 QLWALRHLKKVTWPKY*FRPVQRECL 493
+LW L + K+VTW Y + R CL
Sbjct: 260 ELWCLLNDKRVTWKAYAGHWIARVCL 285
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 133 KKAIRSNITRCISTELAKRKVTN 201
K A+R+NI RC+ T + + N
Sbjct: 3460 KSAVRTNIERCVQTSIESKYYKN 3482
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 78 IDNVANNCVTESNLKRWS*ESYTVEH 155
I+NVANN + L WS Y V+H
Sbjct: 157 INNVANNSLKVKPLTLWSTLLYIVQH 182
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 512 LLLEIRMMLRHSKISKMTHHLQHLK 586
L + + +L+HS I K+ H+LQ+ K
Sbjct: 4454 LNVSVSDILQHSSIEKLAHYLQYEK 4478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,951
Number of Sequences: 5004
Number of extensions: 56650
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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