Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j16
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0088 - 627825-628984,629339-629509,629612-630416 33 0.24
06_01_0465 - 3304417-3306834 32 0.42
04_04_1420 + 33441260-33443704 31 0.96
11_01_0196 - 1547373-1549859 30 2.2
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 30 2.2
10_08_0708 + 20040482-20040808,20040906-20041280 29 2.9
03_06_0601 + 34991912-34992352,34993719-34994516 29 2.9
08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622 29 5.1
04_04_1419 - 33433463-33436009 29 5.1
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 6.8
01_05_0551 + 23169751-23170491 28 6.8
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 28 9.0
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 9.0
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 28 9.0
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 28 9.0
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = -2
Query: 226 GFPSSLDLVCFPVSGTYLCMVSSKMLTKYRACSLWSQCGPSPSHTGSVTACNCG 65
G P+ LD V +G C + K T Y S S C SP+ TG + ACN G
Sbjct: 207 GVPTVLDWV----AGRESCAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNG 256
>06_01_0465 - 3304417-3306834
Length = 805
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +3
Query: 540 LCWDLQRSAFYFADSFEYTIRRYDYDVETGSIANAKTVFKYSDHGLEGIVDGMTIDTDGN 719
L WD R+ +Y + R D + IA + F+ SDHG + ++ +T+D DGN
Sbjct: 213 LSWDNGRTTYYSS-------RHGVLDSDGWFIATDQLNFEASDHGQKDVMRRLTLDYDGN 265
Query: 720 L 722
L
Sbjct: 266 L 266
>04_04_1420 + 33441260-33443704
Length = 814
Score = 31.1 bits (67), Expect = 0.96
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 591 YTIRRY-DYDVETGSIANAKTVFKYSDHGLEGIVDGMTIDTDGNLWVANFD 740
Y RY +D A+ + F SD G EG++ +T+D DGNL + + D
Sbjct: 222 YNSSRYGSFDRRGVFTASDQLQFNASDMGDEGVMRRLTLDYDGNLRLYSLD 272
>11_01_0196 - 1547373-1549859
Length = 828
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 648 TVFKYSDHGLEGIVDGMTIDTDGNLWVANFD 740
T F+ +D G G+ +T+DTDGNL + D
Sbjct: 247 TTFEAADLGAAGVRRRLTLDTDGNLRAYSLD 277
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 91 RCGSARAHTGTTTSRPYTLSASSTRPYISTCQK-RGNIRG 207
RC SARA + +++ P AS RP +S+ + RG RG
Sbjct: 252 RCASARAASRRSSAAPARRRASEPRPRVSSAMRVRGLARG 291
>10_08_0708 + 20040482-20040808,20040906-20041280
Length = 233
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -1
Query: 536 VGDVDVGLEAVHGAVRVDAVQRPLLQVELSRFVFVTHRSGKQPAPG 399
+G V VG EAVHG DA + PLL L RF + P G
Sbjct: 170 IGFVRVG-EAVHGMRLFDASRSPLLDAWLDRFAALDAAKAVLPDTG 214
>03_06_0601 + 34991912-34992352,34993719-34994516
Length = 412
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 608 VSPDGVLEGVREVEGAPLQVPAEAVGDVDV--GLEAVHGAVRVDAVQR 471
V P V E + + + AEA GDV V + AV GAVRVD V+R
Sbjct: 366 VRPPWVKEAIVSDDESAAAATAEA-GDVPVPRAVPAVRGAVRVDGVRR 412
>08_02_0670 - 19877091-19877618,19880033-19880436,19880505-19880622
Length = 349
Score = 28.7 bits (61), Expect = 5.1
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = +3
Query: 321 TARLVRTVAEVDQDNPNNRFNDAK--ADPRGRLFAGTMGHEYEPGKFDLKKGSLYRIDPD 494
+A + EVDQ + + A G L A GH+ P K DL D D
Sbjct: 191 SATITTAAQEVDQPDEHTEAASTTGFATVDGALAAPPPGHQQPPHKDDLVSSGGTNDDGD 250
Query: 495 GSVHRLESNIDISNGLCWDLQRSAFYFADSFE 590
G + D++ G L + YFAD+ E
Sbjct: 251 GGAAVVV--FDVTEGANDRLSCESAYFADAAE 280
>04_04_1419 - 33433463-33436009
Length = 848
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 546 WDLQRSAFYFADSFEYTIRRYDYDVETGSIANAKTVFKYSDHGLEGIVDGMTIDTDGNLW 725
WD R+AF + R +D A+ + F SD G G++ +T+D DGNL
Sbjct: 215 WDNNRTAFNSS-------RHGSFDRRGVFTASDQLQFNASDMGDGGVMRRLTLDYDGNLR 267
Query: 726 VANFD 740
+ + D
Sbjct: 268 LYSLD 272
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 69 QLQAVTEPVWLGEGPHWDHNEQALYFVSIFDETIHKYVPET-GKHTRSKLDGKP 227
+ + V+E + GEG HW A +D HK P++ GKH S G+P
Sbjct: 2030 RFRMVSETCFEGEGSHW-----ASSAFHTYDAGRHKSGPKSIGKHKASSESGRP 2078
>01_05_0551 + 23169751-23170491
Length = 246
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +3
Query: 102 GEGPH---WDHNEQAL-YFVSIFDETIHKYVPE------TGKHTRSKLDGKPTFI-IPIE 248
GE P WD E+ L Y++ + ++++HKY+ + G H GKP + +
Sbjct: 182 GEEPQPLDWDFLEELLFYYLQLNEQSVHKYILKAFADLTAGAHVSCPARGKPQWADKSVR 241
Query: 249 GKKHH 263
+KH+
Sbjct: 242 SRKHY 246
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 282 RLVVEIQWTGEDQTARLVRTVAEVDQDNPNNRFNDAKADPRGRLFAGTMGHEYE 443
RL + T E+ R++ T AEVD + + P R AG +YE
Sbjct: 253 RLAIAGMGTDENSLTRIITTRAEVDLKLITEAYQKRNSVPLERAVAGDTSGDYE 306
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 315 LLLSIVSPRPACPDPPRNGVSSLL 244
LLL + SP P PDPP G ++
Sbjct: 15 LLLDLTSPPPLHPDPPHAGCDEVM 38
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 615 DVETGSIANAKTVFKYSDHGLEGIVDGMTIDTDGNL 722
+V GSIANA Y + EG+ + + D DGNL
Sbjct: 131 EVVVGSIANADP--NYPEEWEEGLANQVQYDADGNL 164
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -1
Query: 650 GLCVRDAPGLHVVVVSPDGVLEGVREVEGAPLQVPAEAVGDVDVGLEAVHGAVRVDAVQ 474
G DA LH+ V S V EV G P+ G +DVG + +H + D Q
Sbjct: 301 GALNHDAKELHMFVWSSSA--SPVSEVSGLPVFSGGGGGGALDVGAKEIHMVIPADLPQ 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,908,658
Number of Sequences: 37544
Number of extensions: 459849
Number of successful extensions: 1836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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