Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j11
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 29 0.95
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 28 1.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 28 1.7
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.9
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 2.9
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 3.8
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 27 3.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 5.1
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 26 5.1
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 26 6.7
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 6.7
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.7 bits (61), Expect = 0.95
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -1
Query: 390 AVFCALLSGKLSLAPSKYSTFLDLLN---TSKLPIGMLMIPYLILDCKIFSTSLDM 232
AV+ A+LS SLAP + TF LLN S+L L + + C I ST LD+
Sbjct: 369 AVYAAILSLDDSLAPESWRTFSRLLNLPSPSQLMKSDLELGQTL--CSIVSTYLDI 422
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = -1
Query: 690 PLAIRSKGSPTISERISETT*A-GCAFTASWPPFKSDITFLTVFNSLISAPELANFFTSP 514
PLA+ PT+S+ + ET A ++SW SD + ++SL + +F P
Sbjct: 40 PLALEGSPLPTVSDVLPETNNAHEEVSSSSWSLSSSD--SIMSYDSLSDDVSVLSFLDCP 97
Query: 513 IFSSKVIGDFGKGSNAEPPPEISTSNRSS 427
+ + + SN+ ++S+ +RSS
Sbjct: 98 LTTFETAPSIASFSNS--AADVSSHSRSS 124
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 263 IVKYFLLLWTCSVRLCLFQQDKHFFPINYKFFLKYLDAHWLDYISMNF*LNFQVKQLIH 87
+ KY L TCS+RLCL + ++ + K + + D+ ++ L K L+H
Sbjct: 505 VEKYTLSSITCSLRLCLLEFPDSLIRSSFYDYFKAIYTTYTDFEDLDHRLYSIKKCLLH 563
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.1 bits (57), Expect = 2.9
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +2
Query: 203 LVGTGKAVQNMSREVENILQSKIKYGIISIP-MGSLDVFNKSRNV-EYFEGAKDNLPDNS 376
+V G + +EN +QSK+ + I+++P + + +F KS + ++ K L ++
Sbjct: 1370 IVRYGNTYEAFEELLENPMQSKVTHIILNLPDIEAYVLFVKSLQLCSLYKDTKFILVTST 1429
Query: 377 AQNTAL-KIKNLITQLNKDDLLLVLISGGGSALLPLPKSPITLEEKIGLVKKLANSGA 547
Q +L KI + N + + VL S PL S + KIG + + A
Sbjct: 1430 RQKESLSKIFSDSEDCNSESIHYVLKLVKPSKFFPLFYSDSEEKGKIGALNDMTRKAA 1487
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.9
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 482 PK-SPITLEEKIGLVKKLANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILSDI 658
PK SP T+ E I L N + EL + D G +V ++P Q VS++LS
Sbjct: 261 PKHSPATVNEHISPPSALTNPSTE--ELKPSTSLPIDQ--GNASVVSKPTQQVSIVLSQN 316
Query: 659 VGDPLD 676
P+D
Sbjct: 317 ASLPVD 322
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 555 LISAPELANFFTSPIFSSKVIGDFGKGSN---AEPPPEISTSNRSSLFNCVMRFFIF 394
+I P N SP+ K++ F G + + PP + S+ SL + RF+ +
Sbjct: 225 VIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAY 281
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = -1
Query: 198 TFFPNKL*VFPKIFR-CSLVGLYFNELLIKFSGKTADTLL-LKICIKS-FMNNLHI 40
T+F V P IF C+++ L +E+L K +G +TLL ++ C K+ + N H+
Sbjct: 467 TYFLYMKYVHPFIFSLCNIIPLNPDEVLRKGTGTLCETLLTVEACTKNIILPNKHV 522
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 537 LANFFTSPIFSSKVIGDFGKGSNAE-PPPEISTSNRSSLF 421
L++ P+ S ++ GK A+ PPP +ST NR+ LF
Sbjct: 181 LSHSLPVPMISREINLKKGKLDQAKIPPPLVSTLNRNELF 220
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 471 NAEPPPEISTSNRSSLFNCVMRFFIFNAVFCALLSGKLSLAPSKYSTFLDLLNTSKLPIG 292
NAE P+ + S+ S C++ + N C L S P+ S+ LD L +K+P G
Sbjct: 2 NAEEDPKPADSDSSE--ECII--CLSNLPNCPLDQWDSSSVPASISSTLDGLRIAKIPCG 57
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 437 LLVLISGGGSALLPLPKSPITLEEKIGLVKKLANSGADIKELN 565
L + + GS++ P+ P L + L+KKL +GA+ +++
Sbjct: 172 LFIAKAAKGSSIKPIELLPKLLPVYVELIKKLTEAGAEYIQID 214
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 199 LSCWNRQSRTEHVQRSRKYFT 261
L+CWNR +T+ R+++T
Sbjct: 196 LTCWNRDDKTDMPSSPREWYT 216
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 263 IVKYFLLLWTCSVRLCLFQQDKH---FFPINYKFFLKYL 156
I+ +F+ W + F+ K F+ IN +FF+KY+
Sbjct: 17 ILTFFVYEWNHDITCLNFKVKKRRGDFYVINERFFIKYI 55
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 189 EKMFILLEQAKPYRTCPEK*KIFYNLKLNMVS*AFLWEVWTYLTNQETLSILK 347
E + IL + PE NLK+ +S L+E+ TY+ + L ILK
Sbjct: 98 ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILK 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,732
Number of Sequences: 5004
Number of extensions: 63455
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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