Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j11
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 34 0.14
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 31 0.75
11_01_0622 + 4996584-4996800,4996975-4997060,4997112-4997492,499... 30 2.3
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546 30 2.3
10_08_0328 - 16805296-16806121,16806493-16807274 28 7.0
12_01_0656 - 5554906-5555194,5555640-5556178 28 9.3
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 28 9.3
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 28 9.3
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 200 YLVGTGKAVQNMSREVENILQSKIKYG----IISI-PMGSLDVFNKSRNVEYFEGAKD 358
++VG G+ + ++SREV ++L S + YG +S+ +G+ ++ K+RN G D
Sbjct: 1118 FIVGMGEMIPDLSREVVHLLDSSVMYGATTSALSLGALGAAAMYGKARNNGSQSGTND 1175
>03_05_0710 + 27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 410 ITQLNKDDLLLVLISGGGSALLPLPKSPITLEEKIGLVKKLANSGADIKELNTVRKVISD 589
+ Q + D LL V++ GG + + P LEE + ++K+ SG D TV ++S
Sbjct: 1080 LLQASLDGLLRVILDGGPTRVFS-PSDATLLEEDLEILKEFFISGGDGLPRGTVENLVSR 1138
Query: 590 LK 595
++
Sbjct: 1139 VR 1140
>11_01_0622 +
4996584-4996800,4996975-4997060,4997112-4997492,
4997585-4997605
Length = 234
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +2
Query: 530 LANSGADIKELNTVRKVISDLKGGQLAVKAQPAQVVSLILS 652
+ GAD++ + ++K +D++GG + A P +V+ ++S
Sbjct: 1 MRQEGADVRGSHKIKKTTADVEGGGEWINALPEEVLQHVMS 41
>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
Length = 532
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = -1
Query: 612 TASWPPFKSDITFLTVFNSLISAPELANFFTSPIFSSKVIGDFGKGSNAEPPPEISTSNR 433
T W PF + L V+ +L PE F+T + ++I KG+ PPP +
Sbjct: 281 TFLWMPFGFALALLRVYVNL-PLPERIVFYTYKLMGIRLIV---KGN---PPPPPKKGHP 333
Query: 432 SSLFNCVMRFFIFNAVFCALLSGKLSLAPSKYSTFLDLLNTSK 304
LF C R + L K+S S F +L++ K
Sbjct: 334 GVLFVCNHRTVLDPVEVAVALRRKVSCVTYSISKFSELISPIK 376
>10_08_0328 - 16805296-16806121,16806493-16807274
Length = 535
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +2
Query: 44 CKLFINDLIQIFKSSVSAVLPE------NLIRSSLKYNPTNEHLNILGKTYNLLGKNVYL 205
C+L + + + + ++ LP+ NL L +N + ++ LG +YN +VYL
Sbjct: 369 CRLLSLENLDLSNNKLTGKLPDCWWNLQNLQFMDLSHNDFSGEISALGTSYNCSLHSVYL 428
Query: 206 VGTG 217
G G
Sbjct: 429 AGNG 432
>12_01_0656 - 5554906-5555194,5555640-5556178
Length = 275
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -1
Query: 642 SETT*AGCA---FTASWPPFKSDITFLTVFNSLISAPELANFFTSPIFSSKVIGDFGKGS 472
S+ T A C+ F W K+DITFLT L + P A+ + FS ++I D K
Sbjct: 118 SKETHAKCSMLGFDVKWDANKADITFLTKTVVLETVP--ASIASLSAFSPRMIADI-KQY 174
Query: 471 NAEPPPEISTSNR 433
P I SN+
Sbjct: 175 TLMPTRYILWSNK 187
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 465 EPPPEISTSNRSSLFNCVMR-FFIF 394
E PP I + S +FNC++ FF+F
Sbjct: 117 EAPPSIPSEPESGVFNCILAIFFLF 141
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 341 FEGAKDNLPDNSAQNTALKIKNLITQLNKDDLLLVLISGGGSALLPLPKSPITLEEK 511
F K+N+P L + N+ + ++ DDLL +L G + + SPI+ +K
Sbjct: 340 FSFPKENVPGKDIDKGMLVVSNIDSSISNDDLLQMLSVYGD--VKEISSSPISCTKK 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,854
Number of Sequences: 37544
Number of extensions: 340463
Number of successful extensions: 914
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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