Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j11
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-1|AAN73881.2|  458|Caenorhabditis elegans Hypothetical pr...   128   3e-30
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    34   0.095
U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center...    31   0.67 
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U21309-1|AAN73881.2|  458|Caenorhabditis elegans Hypothetical
           protein C13B9.2 protein.
          Length = 458

 Score =  128 bits (310), Expect = 3e-30
 Identities = 75/212 (35%), Positives = 126/212 (59%), Gaps = 4/212 (1%)
 Frame = +2

Query: 77  FKSSVSAVLPENLIRSSLKYNPTNEHLNILGKTYNLLGKN-VYLVGTGKAVQNMSREVEN 253
           F+  + AV P +++R+++  NP+   L I    Y+L     + ++  GKA   M++   +
Sbjct: 11  FEKCLLAVEPRSIVRNAISLNPSL--LKIADYNYSLSNSTKIVVIAFGKASILMAKGARD 68

Query: 254 ILQSKI-KYGIISIPMGSLDVFNKSRN-VEYFEGAKDNLPDNSAQNTALKIKNLITQLNK 427
            L+S + +  I+  P     + N+  N  E   GA+DNLPD  +     K+ + I   + 
Sbjct: 69  QLKSSLLQKTIVIAPEQQKGIENELENDTEILYGARDNLPDEKSVFATRKVISEIRDFDS 128

Query: 428 DD-LLLVLISGGGSALLPLPKSPITLEEKIGLVKKLANSGADIKELNTVRKVISDLKGGQ 604
           +  + L LISGGGSALL  P +P+ L EK+  ++ +   GA I+ELNT+R+ +SD+KGG+
Sbjct: 129 ESTIFLFLISGGGSALLTSPSAPLDLAEKLETIRIMQAHGATIQELNTIRQNLSDVKGGK 188

Query: 605 LAVKAQPAQVVSLILSDIVGDPLDLIASGPTV 700
           L  + +    ++LI+SD++G+P++LIASGPTV
Sbjct: 189 LLREIKKGCSIALIISDVIGNPVELIASGPTV 220


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = +2

Query: 107 ENLIRSSLKYNPTNEHLNI--LGKTYNLLGKNVYLVGTGKAVQNMSREVENILQSKIKYG 280
           ++++   ++  PT  H +   L K+ N    +    G GKAV+N+  + E I++ K    
Sbjct: 352 DSVVADPVEIEPTASHSDPIELDKSVNYFTSDDPFFGFGKAVENVEDDAEQIMEDKPHES 411

Query: 281 IISIPMGSLDVFNKSRNVEYFEGAKDNLPDNSAQNTALKIKNLITQ 418
           + S P             E+      NLP  S  N    I+N+ ++
Sbjct: 412 VHSTPQKPTTNVTMDSFDEWSNQPSTNLPTTS--NVITPIRNITSK 455


>U53153-4|AAK77642.2|  650|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform c protein.
          Length = 650

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 28/85 (32%), Positives = 40/85 (47%)
 Frame = +2

Query: 455 GGGSALLPLPKSPITLEEKIGLVKKLANSGADIKELNTVRKVISDLKGGQLAVKAQPAQV 634
           GGGSAL  L KS    E  I ++ +    G  ++ L++ RK+  D+KG  + +  Q A V
Sbjct: 111 GGGSAL-DLTKSGKLDESHIAVILREILKG--LEYLHSERKIHRDIKGANVLLDRQTAAV 167

Query: 635 VSLILSDIVGDPLDLIASGPTVQNT 709
              I    V  PLD +    T   T
Sbjct: 168 --KICDYGVAKPLDTVLKANTFVGT 190


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -2

Query: 245 LLWTCSVRLCLFQQDKH-FFPINY--KFFLKYLDAHWL 141
           +LW C + LC F + +H  + + Y   F   YL  H+L
Sbjct: 160 VLWGCEIFLCFFTETRHNIYVVKYILAFLFTYLQMHFL 197


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 98  VLPENLIRSSLKYNPTNEHLNILGKTYNLLGKN-VYLVGTGKAVQNMSREVENI 256
           VL +NL+ S L+  PTN    +L K  NL   N  +L+G  K + ++  ++E +
Sbjct: 459 VLNQNLVDSLLQIAPTNSDAQLLRKMENLSDPNEEFLLGLTK-IDHIEEKLETM 511


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 197  VYLVGTGKAVQNMSREVENILQSKIKYGIISIPMGSLDVFNKSRNVEYFEGAKDNLPDNS 376
            +YL  T     + +   + IL  K +YGII+I  G     NK + +          PD +
Sbjct: 2129 IYLTTTTAFDTDPTPAAQTILAQK-QYGIITIGYGGATDNNKLQTISGGSACSFTAPDFA 2187

Query: 377  AQNTALK-IKNLITQLN 424
            + N  +K I+ LI   N
Sbjct: 2188 SLNNQIKTIQQLILNAN 2204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,253,253
Number of Sequences: 27780
Number of extensions: 345509
Number of successful extensions: 1020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)