Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j09
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 83 5e-17
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 31 0.15
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 4.2
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 26 5.5
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 26 5.5
SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces pom... 25 7.3
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 9.7
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 82.6 bits (195), Expect = 5e-17
Identities = 49/149 (32%), Positives = 88/149 (59%), Gaps = 16/149 (10%)
Frame = +1
Query: 250 LKNIRRCVLMNYNPSTKLIDMRHYVIRATPVGLNKGTKKVVQGK-----IPNLNRCKDMS 414
+ +++R +L+N ID+RH++I PVG+++ + +++G+ IP+L+ +D+S
Sbjct: 177 INSVKRVLLLNRRDDG-YIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDIS 235
Query: 415 EFF----DKAGLLSESEFEDDPNSQIVLP------QSLASRGAAVDSKS-AIRLFELGPR 561
++ +G S+SE E+D +I P ++L S + K AI+L E+GPR
Sbjct: 236 DYVLHGDGISGAASDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPR 295
Query: 562 ITFQLIKVEDGLMDGEVLYHELVEKTEEE 648
+T +LIK+ + M G+VLYH V K++EE
Sbjct: 296 MTLELIKITEDAMGGKVLYHSHVHKSKEE 324
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 523 SKSAIRLFELGPRITFQLIKVEDGLMDGEVLY 618
SK + L E+GPR +I + +G G V+Y
Sbjct: 212 SKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 238 FQVKLKNIRRCVLM-NYNPST--KLIDMRHYVIRATPV 342
++++ N+ +C+ M + NP KLI ++ V+R TPV
Sbjct: 278 YKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPV 315
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +1
Query: 541 LFELGPRITFQLIKVEDGLMD---GEVLY 618
L ELGPR T +L V+ G+ D GEV +
Sbjct: 263 LQELGPRFTMRLRMVQKGVWDRKEGEVFF 291
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 407 SLHRFKFGILPWTTFLVPLLSPTGV 333
S+H FG+L W + L+S TG+
Sbjct: 323 SIHSNGFGLLEWYVLMALLMSSTGL 347
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 370 VQGKIPNLNRCKDMSEFFDK--AGLLSESEF-EDDPNSQIVLPQSL 498
V+ + +CK + + K + L + ++F EDD NSQI +P +L
Sbjct: 334 VKSLYKDTKKCKVVEDLVSKYASSLSTTNKFSEDDDNSQIEIPTTL 379
>SPAC926.08c |||Brix doamin protein Rpf2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 535 IRLFELGPRITFQLIKVEDGLMDGEVLYHELVE-KTEEEK 651
+ L E+GPRI F + +V+ + +VL L + KT+E K
Sbjct: 218 VELEEMGPRIDFNIRRVQPA--ESDVLEEALKKPKTQEPK 255
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 395 FKFGILPWTTFLVPLLSPTGVALIT*CLISISFVDGL*FINTHLLIFFS 249
F LPWT FLV +++ +G + + IS + I+ HLL S
Sbjct: 397 FLLHCLPWTPFLVQVVAISGFGGASLMIALISDFLSVMTIHIHLLYLAS 445
>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 195 IHIVILTHRIYSVIISGKTKKYKEMCINELQSVHK 299
+H +TH I+ + GK+K+ K + + SV K
Sbjct: 13 VHTGTVTHTIFVYVFLGKSKRLKTFSDSNVGSVIK 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,269
Number of Sequences: 5004
Number of extensions: 52648
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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