Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j09
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0964 + 12773450-12773467,12773578-12773820,12773934-127741...    95   4e-20
07_01_0225 - 1650665-1652743                                           31   0.81 
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642...    29   3.3  

>03_02_0964 +
           12773450-12773467,12773578-12773820,12773934-12774164,
           12774286-12774378,12774463-12774650,12775601-12775794,
           12775892-12776007
          Length = 360

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 53/144 (36%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
 Frame = +1

Query: 208 FSHIAYTVL*FQVKLKNIRRCVLMNYNPSTKLIDMRHYVIRATPVGLNKGTKKVVQG-KI 384
           F H+   +    VKL   +R +L++++   ++I+ RHY I+  PVG+ +  +K++Q  ++
Sbjct: 184 FRHMTPAIDPVTVKLSTCQRILLIHFDREKEMINFRHYSIKLQPVGVTRKIRKLMQNNQV 243

Query: 385 PNLNRCKDMSEFFDKAGLLSESEFEDDPNSQIVLPQSLASRGAAVDSKSAIRLFELGPRI 564
           P+L    D+S++  KAG  SESE +D+  + + L   +     A   KSAIRL E+GPR+
Sbjct: 244 PDLRDLNDVSDYVTKAGYGSESEVDDEA-ATVSLASDVDKLNRA-SRKSAIRLQEIGPRM 301

Query: 565 TFQLIKVEDGLMDGEVLYHELVEK 636
              L+KVE GL  G+VLY + V K
Sbjct: 302 KLHLVKVEAGLCSGDVLYPQPVGK 325


>07_01_0225 - 1650665-1652743
          Length = 692

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 277 MNYNPSTKLIDMRHYVIRATPVGLNKGTKKVVQGKIPNLNR 399
           + ++ ST L+D RHY++     G+NK    +   K+P L R
Sbjct: 263 IGFSASTGLVDSRHYIL-GWSFGMNKPAPMINVNKLPKLPR 302


>01_07_0160 -
           41563109-41563468,41563566-41563985,41564082-41564263,
           41564362-41564542,41565066-41565084,41565185-41565445,
           41566140-41566253,41566264-41566331,41566890-41567018,
           41567141-41567245,41567317-41567456,41567519-41567687,
           41567824-41567900,41568133-41568187,41568660-41568705,
           41568806-41568894,41568996-41569061,41569360-41569425,
           41569817-41569906,41570009-41570026
          Length = 884

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 355 GTKKVVQGKIPNLNRCKDMSEFFDKAGLLSESEFEDDP 468
           G KK+  G++P     +D+  +F K G + ++    DP
Sbjct: 237 GNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDP 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,933
Number of Sequences: 37544
Number of extensions: 287907
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)