Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4j09
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-5|AAB97575.2|  573|Caenorhabditis elegans Lipid deplete...   129   1e-30
L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprote...    28   5.1  
L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006726-1|AAF60453.1|  124|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF043700-5|AAB97575.2|  573|Caenorhabditis elegans Lipid depleted
           protein 6 protein.
          Length = 573

 Score =  129 bits (312), Expect = 1e-30
 Identities = 65/142 (45%), Positives = 97/142 (68%), Gaps = 7/142 (4%)
 Frame = +1

Query: 244 VKLKNIRRCVLMNYNPSTKLIDMRHYVIRATPVGLNKGTKKVVQ-----GK-IPNLNRCK 405
           ++L N++RC++++Y+  T  I MRH+ IR    GLNK  KK++Q     GK IPNL+  K
Sbjct: 200 IQLGNLKRCLIVSYDEETDEIQMRHFAIRVVASGLNKSVKKLMQAEKTMGKNIPNLSTYK 259

Query: 406 DMSEFFDKAGLLSESEFEDDPNSQIVLPQSLAS-RGAAVDSKSAIRLFELGPRITFQLIK 582
           D+S++F   G LS+SEFE D   ++ LPQ ++  RG  V  KS +RL E+GPR+T +L+K
Sbjct: 260 DISDYFLNPGQLSDSEFEGD-QQEVELPQDISEGRGCGVGQKSNVRLHEIGPRLTLELVK 318

Query: 583 VEDGLMDGEVLYHELVEKTEEE 648
           +E+G+ +GEVLYH+   KT +E
Sbjct: 319 IEEGIDEGEVLYHKHNAKTPDE 340


>L25599-5|ABN43086.1|  337|Caenorhabditis elegans Hypothetical
           protein F54H12.5 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 103 SCCLYLDSL*Y--KNYLLNS*CFSSEFHFNTIIFILSFS 213
           +CCL +DSL +  +   LNS   S EF FN+++ I + S
Sbjct: 61  TCCLKIDSLHFHFRRIQLNSKSKSLEFDFNSVVDISACS 99


>U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprotein
           protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 442 SESEFEDDPNSQIVLPQSLASRGAAVDSKSAIRLFELGPRITFQ 573
           ++ + +DDPNS   L  S+  R AA    + +   ++GP+I  Q
Sbjct: 76  TDGKVKDDPNSDYDLQLSIQQRLAAAAQAAQMGQTQIGPQIVGQ 119


>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 532 AIRLFELGPRITFQLIKVEDGLMDGEVLY 618
           +++L E+GPR   +++++  G  +G VLY
Sbjct: 230 SLQLQEVGPRFVLEMVRLFAGSFEGAVLY 258


>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 370 VQGKIPNLNRCKDMSEFFDKAGLLSESEFE 459
           V  KI + + CK++S   D AG+ S+ EF+
Sbjct: 186 VGNKIKSTSFCKNLSSSLDIAGMQSKKEFD 215


>AC006726-1|AAF60453.1|  124|Caenorhabditis elegans Hypothetical
           protein Y23B4A.1 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 411 HIFTSVQVWYFALDHLFSSFIKSNRCCPNYIMP 313
           HIF S  + ++  D  F + I +N C  N I P
Sbjct: 4   HIFCSDGILFYVYDDFFPNIIFANGCGNNVIRP 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,446
Number of Sequences: 27780
Number of extensions: 280668
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)