Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j02
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 32 0.094
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 32 0.094
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.38
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 29 0.87
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 28 1.5
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 2.0
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.7
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.7
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 3.5
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 26 4.7
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 26 6.1
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 8.1
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 505 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 332
VK + KR F+ + H+ + + + ++ + F+VV+D G+R A R
Sbjct: 86 VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145
Query: 331 ARVG 320
RVG
Sbjct: 146 GRVG 149
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 505 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 332
VK + KR F+ + H+ + + + ++ + F+VV+D G+R A R
Sbjct: 86 VKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQR 145
Query: 331 ARVG 320
RVG
Sbjct: 146 GRVG 149
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 228 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQ 100
PSH R LHP ++ Q QP S + G ++ + +Q P+ + +Q
Sbjct: 54 PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQ 97
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 28.7 bits (61), Expect = 0.87
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -1
Query: 490 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLDG---LRGAVRVYSAARVG 320
I +R AG + SLL + VI V+H ++V F VL G + G V + + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311
Query: 319 I 317
I
Sbjct: 312 I 312
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = -2
Query: 261 PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAKQTPATNSNAQNLITAE 82
P +RP S+ P H + A+ RH S SS ++ S A+ I+
Sbjct: 147 PQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGNHVRFQPSIAEEEISFN 206
Query: 81 AIASEIHKQKNI 46
+ ++ ++ ++++
Sbjct: 207 SFSNSLNSEEDV 218
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 150 SSETSAKQTPATNSNAQNLITAEAIASE 67
SS T+A TP + +++ I AEAIA E
Sbjct: 215 SSSTTALSTPRQSMDSKRTINAEAIAGE 242
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 416 VNCYDYMAIHKKGGYGCTGELP 481
+N DY+ ++ GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 41 LIIFFCLCISDAMASAVIRFCALLLVAGV 127
LII+ C CIS A+A + +L+ GV
Sbjct: 154 LIIYVCFCISCALARNYAQLVISMLIMGV 182
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 165 SVTGGSSETSAKQTPATNSNAQNLITAEAIASEIHKQKNIIKK*CVCARTTYRLT 1
S T SS + A++ +A N I + + + IH+Q +++ + TTY T
Sbjct: 79 SSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQQVSVVTEYVTIQPTTYVTT 133
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 167 LPSQGGVPKHRRNRLRQP 114
L +G + KHR+NRLR+P
Sbjct: 90 LKDEGKLGKHRKNRLRRP 107
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -2
Query: 234 VSPSHCRPCLHPEIAWQMQPRHT 166
VS HC C H E W R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 303 ERPLMVGFPASAQ*PHVMRKRPHVSPSHCRPCLHPEIAWQMQPRHTSVTGGSSETSAK-Q 127
++P + P + PHV + S S P + + + P H S S S +
Sbjct: 111 DKPSNIETPVKIESPHVSQNNTFQSYSELSPNVETSLTMKTPPAHASTPKFRSHKSHRVA 170
Query: 126 TPATNSNAQNLITAEAIASEI 64
P + ++ L T+ A + +
Sbjct: 171 VPMSFMDSSALHTSPAFSERL 191
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 433 VVIAVDHSVAVAVLAKSFHVVLDGLRGAVRVYSAARVG 320
+VI DH + V VLAK+ +++ A Y A R+G
Sbjct: 279 LVIISDHFM-VPVLAKAIRTIIEAPEDASATYFAIRLG 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,753
Number of Sequences: 5004
Number of extensions: 68470
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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