Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4j02
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 71 6e-13
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 62 5e-10
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 39 0.003
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 36 0.038
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 2.5
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.5
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 29 2.5
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 28 5.8
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 28 5.8
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p4... 28 7.6
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 71.3 bits (167), Expect = 6e-13
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Frame = +2
Query: 158 VTEVCLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDA 322
V+ CL CIC SGCK + C + +CG ++I GY+ D G+PT G + +A A
Sbjct: 16 VSADCLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--A 72
Query: 323 YSSCTVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVF 502
+ C D CA V+NY R+ CNG G+ C H G GC Y N
Sbjct: 73 WKRCADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGV 132
Query: 503 NQC 511
C
Sbjct: 133 KSC 135
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 66.5 bits (155), Expect = 2e-11
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 170 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 337
CL CIC SGCK + +CG ++I Y+ D G+PT +G + +A A+ C
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77
Query: 338 VDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 511
D CA V+NY R+ C G G C H G GC Y N C
Sbjct: 78 NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 61.7 bits (143), Expect = 5e-10
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +2
Query: 170 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 334
CL CIC SGCK + C + +CG ++I Y+ D G+P +G S + A+ C
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76
Query: 335 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 511
D CA V+NY R+ +C G G C H G GC Y + C
Sbjct: 77 ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 218 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMKRFGQ 394
QC C G F I Y+ D G+P A+ C D CA + NY R+
Sbjct: 20 QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78
Query: 395 DCNGDGVVNC 424
CNG G+ C
Sbjct: 79 QCNGLGMSEC 88
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 350 CAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 511
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 35.5 bits (78), Expect = 0.038
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Frame = +2
Query: 170 CLGCICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSC 334
CL +C SGC L C + CG FR+ + +P + +A+ +C
Sbjct: 31 CLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNC 88
Query: 335 TVDPYCAAQTVQNYMKRFGQDCNGDGVVNCYDYMAIHKKGGYGC 466
D C+A ++ +F C G C IH G GC
Sbjct: 89 AQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.5 bits (63), Expect = 2.5
Identities = 27/86 (31%), Positives = 34/86 (39%)
Frame = +3
Query: 276 PENPPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRRE 455
P N S +PT + T P PSKTT T T TA TT ST
Sbjct: 322 PANTKSSAHLDNSDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTV 379
Query: 456 ATGAPANFLLTM*TCLTSASMSSRST 533
T P T T+AS ++++T
Sbjct: 380 TTQKPTTVTSTTTLPSTTASTTTKTT 405
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = +3
Query: 285 PPSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATG 464
P + + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 465 APANFLLTM*TCLTSASMSSRST 533
P T T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -1
Query: 505 VKHVYIVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSFHVVLD--GLRGAVRVYSA 332
VK + K F+ V H+ + + + ++ + F+VVLD G R A R +
Sbjct: 96 VKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAP 155
Query: 331 ARVG 320
RVG
Sbjct: 156 GRVG 159
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +3
Query: 318 MPTLAAL*TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 497
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552
Query: 498 CLTSASMSSRST 533
T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 180 QPRHTSVTGGSSETSAKQTPATNSNAQNLITAEAIASEIHKQKNII 43
QP+ T++ S+ETS T AT + +A+ K+++ I
Sbjct: 452 QPKTTTIVASSTETSTVTTDATEATTTTTAPTTTVATTTTKKRSNI 497
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 323 YSSCTVDPYCAAQTVQNYMKRFGQDC-----NGDGVVNCYDYMAIH 445
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 637 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 461
+I ++ E + Y +A ++ V L++ QS +R + ++I+ +V YI++RKF G
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167
Query: 460 V 458
V
Sbjct: 168 V 168
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 637 KIILVLMETMTDYHKAVVGYSNLVGFLIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAP 461
+I ++ E + Y +A ++ V L++ QS +R + ++I+ +V YI++RKF G
Sbjct: 111 QIRVLYNEELRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQ 167
Query: 460 V 458
V
Sbjct: 168 V 168
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 342 TRTAPRRPSKTT*KDLARTATATEWSTAMTTWRSTRREATGAPANF 479
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>AF039050-5|AAC47938.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 34A8 protein.
Length = 499
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 204 HPEIAWQMQPRHTSVTGGS---SETSAKQTPATNSN 106
HPE+ +++ T VTGG+ S T +TP N+N
Sbjct: 327 HPEVVEKLRKELTEVTGGTRGVSLTDRTKTPYLNAN 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,455
Number of Sequences: 27780
Number of extensions: 419515
Number of successful extensions: 1103
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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