Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i24
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   5.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   5.6  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   7.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   9.8  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    24   9.8  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    24   9.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.8  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = +1

Query: 40  SHLKVYKALSDLRQENTFRYG---RYESLALNQD-----IFVFKRWLNDVI 168
           S L   K+ +D+  + TFR     ++  + LN +     IFVFK W+ D+I
Sbjct: 213 SRLLYAKSSADVGSDFTFRMSLLWKHPRVTLNTNLSDAHIFVFKHWVIDLI 263


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 278 KMRGIHSTRNLYPLSDSKDSS*RLFRLSNKSFVK 379
           K+R + S   ++P SDSKD   RL  L+  S  K
Sbjct: 321 KLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSSTK 354


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 115 LALNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTYFE 228
           +++N DI     W ND +  +++   D  +  DLT F+
Sbjct: 194 MSVNVDISSSAFWRNDSLLQILMEYTDCSNVRDLTRFD 231


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 109  ESLALNQDIFVFKRWLNDVIYL 174
            E LA++ DIF   R L+DVI L
Sbjct: 1459 ERLAISDDIFELYRRLDDVIDL 1480


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 252 HGNVPRNIFEVCKINVMFHVSHIHN 178
           H N+P++I   C I  + H+  + N
Sbjct: 177 HSNIPKDIELACVIRYLKHLKSVPN 201


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 261 PYRHGNVPRNIFEVCKIN 208
           P+ H   P N+  VCK+N
Sbjct: 235 PFAHVAPPENVLFVCKLN 252


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 121  LNQDIFVFKRWLNDVIYLVVVNMRDVEHNIDLTY 222
            L   I + + WLN +   + + +R V+   DLTY
Sbjct: 1033 LKDHIHLEELWLNLLFLSLGLGIRSVQFRTDLTY 1066


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,531
Number of Sequences: 5004
Number of extensions: 28360
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)