Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i24
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    28   3.1  
12_02_1258 - 27376626-27376850,27376936-27377069,27377424-273776...    27   5.5  
09_04_0457 - 17736158-17737336                                         27   7.2  
07_01_0264 + 1970019-1970749,1970892-1971546                           26   9.6  
04_04_1497 - 33996990-33997178,33997915-33998127,33998320-339985...    26   9.6  

>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -3

Query: 395 FFLYNISRMIYLIT*TTFKTSPSNPTTGRDFASNVSPSFLGELTLLIDTATFP--ETFSK 222
           FFL+ ++ + +    +TF T  ++ TT   FA  +    +G LT L+ T  FP   ++ K
Sbjct: 315 FFLFQLNMLSFAFMISTFVTKAASATT-VGFAIFI----IGFLTQLVTTFGFPYSTSYQK 369

Query: 221 YVRSM 207
           Y R++
Sbjct: 370 YYRTI 374


>12_02_1258 -
           27376626-27376850,27376936-27377069,27377424-27377678,
           27377804-27378136,27378322-27378413,27378519-27378629,
           27378815-27378886,27379000-27379071,27379141-27379212,
           27379322-27379393,27379505-27379576,27379786-27379921,
           27380044-27380092
          Length = 564

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 185 ICETWNITLILHTSKMFLGTLPCR*GALTHLK 280
           I E  ++T++  +S +  GT+P   G+LTHL+
Sbjct: 125 IGELIHLTILDLSSNLLRGTIPASIGSLTHLR 156


>09_04_0457 - 17736158-17737336
          Length = 392

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 335 SPSNPTTGRDFASNVSPSFLGELTLLIDTATFPETFSKYVR 213
           S  NP  G  +A+N SPS    + +LI    F   FS YVR
Sbjct: 30  SQDNPPAGY-YATNFSPSMAIVIVVLIAAFFFLGFFSIYVR 69


>07_01_0264 + 1970019-1970749,1970892-1971546
          Length = 461

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 335 SPSNPTTGRDFASNVSPSFLGELTLLIDTAT 243
           +PS  + GRD  + VSP     +TL+++ AT
Sbjct: 54  TPSVASVGRDVKAPVSPPAGASVTLVVEQAT 84


>04_04_1497 -
           33996990-33997178,33997915-33998127,33998320-33998553,
           33998622-33998818,33999327-33999491,33999758-33999857,
           34000213-34000428
          Length = 437

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 338 TSPSNPTTGRDFASNVSPSFLGELTLLIDTATFPETFSK 222
           TS ++P+    F + V   + GE+ + I    FP++F K
Sbjct: 307 TSLADPSANIIFGAVVDDRYTGEIHVTIIATGFPQSFQK 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,751,066
Number of Sequences: 37544
Number of extensions: 151517
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)