Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i24
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical pr...    34   0.032
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    34   0.032
AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical ...    27   4.9  
U53155-11|AAC48272.1|  360|Caenorhabditis elegans Hypothetical p...    27   6.4  
AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical ...    27   6.4  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    26   8.5  
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    26   8.5  
AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z80223-8|CAN99671.1|  177|Caenorhabditis elegans Hypothetical
           protein F26D10.9b protein.
          Length = 177

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = +1

Query: 10  NVEVQKASERSHLKVYKALSDLRQ-ENTFRYGR-YESLALNQDIFVFKRWLNDV------ 165
           N   Q  +E S LK+Y+ L+ LRQ +     G       +N+D+ +F R++  V      
Sbjct: 45  NYNTQFETENSALKIYRKLAKLRQRDEALIVGETVRDELINEDVILFSRYVQAVNNTATG 104

Query: 166 -IYLVVVNMRDVEHNIDLT 219
             ++V +N  D E  ID +
Sbjct: 105 STFIVALNFGDKEQKIDFS 123


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = +1

Query: 10  NVEVQKASERSHLKVYKALSDLRQ-ENTFRYGR-YESLALNQDIFVFKRWLNDV------ 165
           N   Q  +E S LK+Y+ L+ LRQ +     G       +N+D+ +F R++  V      
Sbjct: 481 NYNTQFETENSALKIYRKLAKLRQRDEALIVGETVRDELINEDVILFSRYVQAVNNTATG 540

Query: 166 -IYLVVVNMRDVEHNIDLT 219
             ++V +N  D E  ID +
Sbjct: 541 STFIVALNFGDKEQKIDFS 559


>AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical
           protein F28A10.2 protein.
          Length = 478

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +2

Query: 41  PILKFTRLCQIYVKKTHSDTAVMSL-----*L*IRIFLYLKDGLTTSFI*WL 181
           P LK   +CQIY++    DT    L      L  R+F Y  +GL  S   W+
Sbjct: 190 PFLKNYEVCQIYIEIHGGDTEHAQLLPQIAHLKFRLFSYEVNGLNRSLFSWI 241


>U53155-11|AAC48272.1|  360|Caenorhabditis elegans Hypothetical
           protein ZC513.10 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 31  SERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLND 162
           S + H  V    S+L + N         L  N D+ ++++WLN+
Sbjct: 174 SHQFHSTVENQRSNLTEFNMLFRNEIIHLYTNDDLVIYRKWLNE 217


>AF067210-2|AAC16984.1|  308|Caenorhabditis elegans Hypothetical
           protein C04F1.1 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 258 YRHGNVPRNIFEVCKINVMFHV 193
           Y++G   +N  +VC+IN+  H+
Sbjct: 236 YKNGRFDQNQIDVCQINIEIHI 257


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 238  GNVAVSIRSVNSPKNE 285
            G+ A+++R+VNSP NE
Sbjct: 1260 GSAAITVRNVNSPDNE 1275


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 238 GNVAVSIRSVNSPKNE 285
           G+ A+++R+VNSP NE
Sbjct: 826 GSAAITVRNVNSPDNE 841


>AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical
           protein F53G2.1 protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +1

Query: 19  VQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYLVVVNMRDV 198
           V +   +S  K+Y  L + + E T R     +   N     FK + N  IY+ ++  +  
Sbjct: 24  VYRLDSKSSNKIYNLLLEKKNELTDRISLQVAAKFNLSEISFKNFPNSTIYVEIL-QKSC 82

Query: 199 EHNIDLTYFENVSGNVAVSIRSVN 270
             ++ L   +N++       +S+N
Sbjct: 83  LKSLCLGNLKNIASFFEDDQKSIN 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,194
Number of Sequences: 27780
Number of extensions: 152084
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)