Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i24
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    43   1e-06
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    43   1e-06
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   6.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   9.0  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +1

Query: 1   ETLNVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-V 177
           +T+N+  +K  + S   ++K  + L++   F+     +  LN ++F F R   D   L  
Sbjct: 445 KTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYA 504

Query: 178 VVNMRDVEHNIDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 327
           ++N  + E  +DL  F NV   + +   + NS        +   +  +GF
Sbjct: 505 ILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
 Frame = +1

Query: 1   ETLNVEVQKASERSHLKVYKALSDLRQENTFRYGRYESLALNQDIFVFKRWLNDVIYL-V 177
           +T+N+  +K  + S   ++K  + L++   F+     +  LN ++F F R   D   L  
Sbjct: 445 KTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYA 504

Query: 178 VVNMRDVEHNIDLTYFENVSGNVAVSIRSVNSPKNEGDTFDAKSLPVVGF 327
           ++N  + E  +DL  F NV   + +   + NS        +   +  +GF
Sbjct: 505 ILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGF 554


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 278 LGELTLLIDTATFPETFSKYVRSML 204
           LGE   L+ +ATFP+      R  L
Sbjct: 380 LGERQTLMFSATFPDEVQHLARRFL 404


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 178 VVNMRDVEHNIDLTYFENVSGNVAVSIRSVNSPK 279
           V+  + +E N D  Y  N   +  +S +    PK
Sbjct: 28  VITSQQLEVNFDGNYINNFETSNGISHQESGQPK 61


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 347 TFKTSPSNPTTGRDFASNVSPS 282
           T + SPSNP+  R   S+V  S
Sbjct: 330 TCRCSPSNPSITRTGLSSVRDS 351


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 211 DLTYFENVSGNVAVSIRSVNSPKNEGD 291
           D+  + N  GN  V++ +  + K  GD
Sbjct: 119 DIVLYNNADGNYEVTLMTKATLKYTGD 145


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 251 TATFPETFSKYVRSMLCSTSR 189
           T  F  T S+Y R   CS  R
Sbjct: 221 THDFQHTSSRYSRERRCSRDR 241


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 251 TATFPETFSKYVRSMLCSTSR 189
           T  F  T S+Y R   CS  R
Sbjct: 221 THDFQHTSSRYSRERSCSRDR 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,249
Number of Sequences: 438
Number of extensions: 1736
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)