Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i22
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    36   0.004
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   0.50 
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    29   0.50 
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.0  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   2.6  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   3.5  
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    26   6.1  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.1  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   8.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.1  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
 Frame = +3

Query: 264 QLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDG 443
           ++ P     I+++   N  +++  D      +L  LD+SNN      LRS     P    
Sbjct: 423 KIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN------LRS-----PRGKP 471

Query: 444 IYREIALETLNLGYNEIHSLDRYLFK--YTPNLTRLYLNNNPIEILDHVSILAISSATNL 617
           I     LE LN+  N+I+ LD  +F      +L  L + NN +  L H +   +    NL
Sbjct: 472 ITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLV----NL 527

Query: 618 EVLDLSKTDIDSIPL 662
             LDLS  +  + PL
Sbjct: 528 TYLDLSYNNFVTFPL 542


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/88 (21%), Positives = 38/88 (43%)
 Frame = +3

Query: 447 YREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVL 626
           Y    LE  +   NE+   +      TPN +    N++ +++ D++S L      N   +
Sbjct: 212 YVYYTLENDSENINEVKKFEDEEDTSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKI 271

Query: 627 DLSKTDIDSIPLDAFRGLVKFTTDRFIG 710
           + +  D+  +  D  +   K+  D+ IG
Sbjct: 272 NATDADVKQLLSDVKKNKSKWANDQRIG 299


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 25/85 (29%), Positives = 43/85 (50%)
 Frame = +3

Query: 429 PYEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSA 608
           PYE     +  +  L LG+N I S+   + K+T  L  L + +N +      S+  + S 
Sbjct: 43  PYEQLERIQGRIARLALGHNFIKSIGPEILKFT-RLRYLNIRSNVLREFPE-SLCRLES- 99

Query: 609 TNLEVLDLSKTDIDSIPLDAFRGLV 683
             LE+LD+S+  I  +P ++F  L+
Sbjct: 100 --LEILDISRNKIKQLP-ESFGALM 121


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 352 MFLKASSSISITRFDLKLIAILFPGIGLSCVIFVMLLLKNVTR 224
           M +  S + S+   D KL   L   +GLSC I ++L L   TR
Sbjct: 126 MVVDVSPAFSVNPIDKKLAIGL--SVGLSCCILIVLFLHFATR 166


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 206 KQRWSRPSDVFQQQHYKYNATESD 277
           K +++RPSD ++ ++  YNA  SD
Sbjct: 96  KGKFTRPSDEYESEYSDYNAQPSD 119


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +3

Query: 432 YEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHV---SILAIS 602
           YED +Y    L   +LG  E   + R L   +P+L   Y +    E LD +    I   S
Sbjct: 348 YEDCVYESEVLTIPHLGLQEREFVLRPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYS 407

Query: 603 SATNLEVLDLSKT-DIDSIPLDAF 671
           S  N ++++ + T  I ++  D+F
Sbjct: 408 SFDNKKIINGALTMGILNVTPDSF 431


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 156  RRDIVKIPNWPE----QINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFK 308
            R D+ +  N+ E    ++ N+S D H    F   S+T+   ++  P +R  +  K
Sbjct: 1073 RNDVAQEDNFIELSSNEVRNVSNDEHKHTLFHGQSLTHNNLIAVTPPSRTGVEHK 1127


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 462 LETLNLGYNEIHSL-DRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLSK 638
           L+TL+L  N +  + D       P LT L   +NP+    +  +  I    +L +LD  +
Sbjct: 89  LKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFER 148


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +3

Query: 168 VKIPNWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFR 347
           +K  NWP  ++N SKD    V+   N    + QL+P   +R  +  ++  V++  +   +
Sbjct: 275 LKAANWPRTVSNFSKD----VSDGENYTVLLNQLAPELCSRAPL--QTTDVLQRAEQVLQ 328

Query: 348 NIPRL 362
           N  +L
Sbjct: 329 NAEKL 333


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 175 ILTMSRREQFSVRLLVSSTDISQGALGASAP-ARFDDTRTIVIVNTAGKYIFLDNSQH 5
           +L  S  E+  V+LL SS   S+      A    FD+  + ++++   K+I L+N  H
Sbjct: 6   LLKKSIAEKKDVKLLASSEATSKVEKIEDAQYILFDENTSPILIDEPTKFIKLENDSH 63


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 355 GMFLKASSSISITRFDLKLIAILFPGIGLSCVI 257
           G+F++    ++  +F+ K +A LF  I ++C+I
Sbjct: 200 GVFIRVFYLVNKEKFEKKELAFLFSSIVVACLI 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,479
Number of Sequences: 5004
Number of extensions: 58466
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)