Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i09
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    87   2e-18
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   1.8  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    27   1.8  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.5  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   7.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   7.3  

>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 37/74 (50%), Positives = 53/74 (71%)
 Frame = +1

Query: 412 EQCKLYLYQTPRLQGLWSKVLPSRYNEIVGLQHMKLYIVDDRVLLSGANCSNDYFMQRQD 591
           ++C++ LY TP L+GL  +++P R+NE  GLQHMK+Y  DD +++SGAN S DYF  R+D
Sbjct: 116 DRCEIKLYHTPNLRGLRKQLVPHRFNEGWGLQHMKIYGADDNLIISGANLSRDYFTNRKD 175

Query: 592 RYIEIDDPDLANFY 633
           RY    D  LA+F+
Sbjct: 176 RYYLFSDKGLADFF 189


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 237 FPWKYQTPETNEFAVNCDINKTNHD 311
           FPWK +  E+   A N    K+NH+
Sbjct: 6   FPWKIRVDESRGLAGNSGTKKSNHE 30


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 286 VILIKQIMIMNVPIRFK-VGEFQSFSWLYSAAPCFPKY 396
           VI ++Q  ++ VP   K V E QS+ W +   P F ++
Sbjct: 252 VITLEQNDLLGVPSILKAVNELQSWEWTFGQTPSFKQH 289


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 451 QGLWSKVLPSRYNEIVGLQHMKLYIVDDRVLLS 549
           +G+WS   P R NE+  L+  + Y++D+   +S
Sbjct: 458 KGIWSFRQPKRQNEMPRLKTHRDYVLDEMQWMS 490


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +1

Query: 304 IMIMNVPIRFKVGEFQSFSWLYSAAPCFPKYFLDLSEQC 420
           ++++  P  F    F    W     PC P YF     QC
Sbjct: 106 LLVLVYPSVFTTA-FYHQKWALRLNPCLPTYFFHRQRQC 143


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 551 PLSKTLSSTMYSFICCNPTISLYLDGRTLDHNP 453
           P++K LSS + S    N T  LY DGR L  NP
Sbjct: 225 PIAKMLSSLLPS----NITAILYPDGRGLYQNP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,643
Number of Sequences: 5004
Number of extensions: 49574
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)