Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i09
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    97   1e-20
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
 Frame = +1

Query: 406 LSEQCKLYLYQTPRLQGLWSKVLPSRYNEIVGLQHMKLYIVDDRVLLSGANCSNDYFMQR 585
           +SE+ K+YL+ TP L GL  +VLP R +EI+GLQHMKLYI DD VL+SGAN S+ YF  R
Sbjct: 99  ISEKSKIYLFHTPELSGLVKRVLPQRADEIIGLQHMKLYIFDDNVLISGANLSDSYFTNR 158

Query: 586 QDRYIEIDD-PDLANFYRDIIDEVS 657
            DRY    +   LA+F+ +II+ V+
Sbjct: 159 TDRYFLFRNCKPLADFFHEIINVVA 183


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +1

Query: 379 PCFPKYFLDLSEQCKLYLYQTPRLQGLWSKVLPSRYNEIVGLQHMKLYIVDDRVLLSGA- 555
           P  P+Y  D  E  +L L Q    QGL    L        G+QH K +IVDD+ L  G+ 
Sbjct: 279 PVMPEYDYDADELERLGLIQR---QGLDMNTLNGGSG---GVQHSKTFIVDDKHLFVGSM 332

Query: 556 NCSNDYFMQRQDRYIEIDD-PDLANFYRDIIDEV 654
           N     F Q+ +  +E  D P +A     + D++
Sbjct: 333 NFEWKSFSQKIEIGLEFHDCPCIAKDASRLFDQM 366


>Z81088-9|CAB03126.1|  335|Caenorhabditis elegans Hypothetical
           protein F53F1.9 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 376 APCFPKYFLDLSEQCKLYLYQTPRLQG---LWSKVLPSRYNEIV 498
           A CFP ++  L E C L++ Q  +L G    W  + P  Y  I+
Sbjct: 119 AVCFPIFYRKLGEPCYLFIMQAIQLGGGVLAWVLLGPDLYEYIL 162


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +1

Query: 361 WLYSAAPCFPKYFLDLSEQCKLYLYQTPRLQGLWSKVLPSRYNEIVGLQHMKLYIVDDRV 540
           +++    CFP   L  +++ K+ L +       W+K+ P +Y    GL++ K +   DR 
Sbjct: 79  YIFQFCHCFPPLTLTGAQRYKMSLKKAMAESSEWNKIFPIKY-WYGGLKNYKCWKEVDRH 137

Query: 541 LL 546
           L+
Sbjct: 138 LV 139


>Z47356-8|CAD27185.1|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +1

Query: 361 WLYSAAPCFPKYFLDLSEQCKLYLY--QTPRLQGLWSKVLPSRYNEI-VGLQHMKL---- 519
           WL +   C P+    L E CK+ +   +  R + L+ ++     +E+   L+++KL    
Sbjct: 319 WLITNGTCMPRNVEKLEEGCKISVSADRRWRQEKLYKQMTDCCIDEVATPLRNLKLSPQE 378

Query: 520 YIVDDRVLLSGANCSNDY 573
            +V   ++L    CS+DY
Sbjct: 379 IVVIKIIVLFNCGCSSDY 396


>Z47075-8|CAA87381.2|  477|Caenorhabditis elegans Hypothetical
           protein E02H1.7 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +1

Query: 361 WLYSAAPCFPKYFLDLSEQCKLYLY--QTPRLQGLWSKVLPSRYNEI-VGLQHMKL---- 519
           WL +   C P+    L E CK+ +   +  R + L+ ++     +E+   L+++KL    
Sbjct: 319 WLITNGTCMPRNVEKLEEGCKISVSADRRWRQEKLYKQMTDCCIDEVATPLRNLKLSPQE 378

Query: 520 YIVDDRVLLSGANCSNDY 573
            +V   ++L    CS+DY
Sbjct: 379 IVVIKIIVLFNCGCSSDY 396


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 389 LNISLICLNNVNCIYTKLQGFRDYGPKFCHQDI 487
           L +S +CLN++  I ++    ++YG KF  +D+
Sbjct: 213 LGVSDLCLNDILSINSEFVSVQNYGGKFTVKDL 245


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 243 WKYQTPETNEFAVNCDINKTNHD 311
           + YQTP+  +FA+  +I ++ HD
Sbjct: 278 FNYQTPDGRKFAITIEIKRSIHD 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,526
Number of Sequences: 27780
Number of extensions: 270173
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)