Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i06
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    30   2.3  
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    29   3.0  
02_02_0719 + 13303116-13303118,13304381-13304485,13304703-133047...    28   6.9  
10_08_0390 + 17470494-17470503,17470683-17470903                       28   9.2  
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393...    28   9.2  

>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 344 TRTSSVGICLQFTSGVRRLQSPTRPRSVPHTNR*RGRALL 463
           T TSS+ +     + +R L SP RP +V    R R RALL
Sbjct: 7   TTTSSLLLLHHPAAAIRSLPSPPRPSAVARPGRSRRRALL 46


>07_01_0552 +
           4109906-4109983,4110422-4110484,4110496-4110525,
           4110567-4110621,4111046-4111143,4112259-4112417,
           4112518-4112577,4113436-4113624,4113749-4113802,
           4113959-4114045,4114149-4114881,4115282-4115373,
           4115739-4115812,4116097-4116199,4116342-4117204,
           4117649-4117724,4117861-4117972,4118092-4118168,
           4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 190 KVHSHHVKENRYNGNELRPQYFHLNKLVKVLNTRRQNFEFAIALNVKYLVSSACCARADF 11
           ++ + H   + +N N    ++ H NKL KV++T  +     I++      S +C  R+D 
Sbjct: 725 QIPAAHALASIFNKNLHNSEFSHENKLDKVIDTILERCFSTISVRSNMKTSLSCAGRSDD 784

Query: 10  A 8
           A
Sbjct: 785 A 785


>02_02_0719 +
           13303116-13303118,13304381-13304485,13304703-13304762,
           13305482-13305559,13305962-13306024,13311098-13311184,
           13311626-13311708,13312199-13312271,13312826-13312829,
           13313576-13313640,13313719-13313898,13314353-13314520,
           13314591-13314839
          Length = 405

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 444 DEDERYFLYQTHNGQYRKERRLKDGSVVGTTGW---VGADGFLRLQDYIA 584
           ++ +R  L  THN     E +   G +  TTGW   + A G L+L++Y+A
Sbjct: 220 EDGQRLKLVTTHNLMVYIELKRASGKIYITTGWPQFIEATG-LQLKEYVA 268


>10_08_0390 + 17470494-17470503,17470683-17470903
          Length = 76

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 578 HS*RPGL*NIQIQNCICWTKPTDK*VLE 661
           H  RPG  ++ I  C CW KP  + + E
Sbjct: 46  HQWRPGGTDVSIAGCRCWRKPRQERMAE 73


>02_05_0023 +
           25138709-25138823,25139013-25139197,25139268-25139335,
           25139729-25140041,25140621-25140962,25140990-25141079
          Length = 370

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 543 PSPLCQLRIHLLTSFLYDTVHCEFGRGS 460
           P P+ Q+ IH+  SFL +  +C+F  G+
Sbjct: 313 PLPVSQVFIHIRISFLKNCYYCQFDWGN 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,517
Number of Sequences: 37544
Number of extensions: 409825
Number of successful extensions: 1061
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)