Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i04
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    80   3e-16
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    28   1.6  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    28   1.6  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   2.7  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.6  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.3  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.3  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   8.3  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   8.3  

>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 2/208 (0%)
 Frame = +3

Query: 102 DVEMKNVESPAAVSDVETA-DVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 278
           D+++ +V     V   ET  +   +     +QD+  +I  + +A   ++PR   R LR  
Sbjct: 7   DMQVDSVNQEENVDSGETKQNTVTEVPRTVLQDVEANIAALMQATKQRDPRLVYRSLRTT 66

Query: 279 PSTRRKLNGNVLRAIINQIYPA-SAEKETILSFVENPLPGAVEIEAPRSRSAPKQPVPEV 455
            +   +LN +VL  +I + Y   ++ K  +L  ++ P  G  +     +        PEV
Sbjct: 67  SNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDMPQNGD-DSSTSITNGNGNTIFPEV 125

Query: 456 DTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFELTNK 635
           D Y               E   E  ++++ ++ + +RRTLD IAAK YFY+   FE  N+
Sbjct: 126 DMYLQLLLSMTLYYNEKYEVGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNR 185

Query: 636 LDVIRGLLHARLRTSTLRNDYEGQAVII 719
               R  L +  RT++LR+D E QA+++
Sbjct: 186 SVECRNTLLSVHRTASLRHDSETQAMVL 213


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 138 VSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLR 317
           +SD  +  VK D     ++ L ++IR   K  TSKE R    +L+ LP+   +    + +
Sbjct: 676 ISDAYSVLVKFDDMEETLEVLLDYIR---KCSTSKEARIVYIILQNLPNISFRYQKKICK 732

Query: 318 AIINQIYP 341
            +++ IYP
Sbjct: 733 LLLD-IYP 739


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 210 IRQID-KAVTSKEPRFAMRVLRALPSTRRKLNGNVLR 317
           IR +D +A  SK+P   M V   LP+ R KL  NV R
Sbjct: 101 IRIVDIEAENSKDPVIKMNVQTTLPAYRSKLYKNVRR 137


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +3

Query: 171 DADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRA---LPSTRRKLNGNVLRAIINQIYP 341
           D DV+ V+D+      +   +TS    F   +  A   +P T   +   +   +   I+ 
Sbjct: 98  DGDVV-VKDIEPTAGTVTTTITSGSHEFTTTLAEASGTVPGTVEVVEP-LAGTVTTTIHS 155

Query: 342 ASAEKETILSFVENPLPGAVEIEAP 416
            S E  T L+     +PG VE+  P
Sbjct: 156 GSVEYNTTLATASGTVPGTVEVVEP 180


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = -3

Query: 227 FIDLSDVFS*ILNS*YISIFLYIRCLNVTNSCRTFHIFHFNIFHWSHCI 81
           F+ ++  +S +    + ++ L++ C   +++   FH F    +H+S C+
Sbjct: 29  FLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLCL 77


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 VESPAAVSDVETADV-KKDADVLAVQDLREHIRQID 224
           V S  AV   E A++ KKD ++  +QD+ E IR++D
Sbjct: 107 VRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIRKLD 142


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 338  INLID-NSSQNVTV*LPASARQCSKYTHSESRFFRSNSFIDLSDVF 204
            I ++D N S    + L  ++R CS+  HS      +NSF+ L++ F
Sbjct: 2944 IKVLDLNDSIRFEIYLFLASRLCSEKQHSSDTHSLANSFVLLANEF 2989


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 219 IDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLRAIINQIYP 341
           IDK + S + + ++ + + L  +   +  N++ +II+QI+P
Sbjct: 364 IDKIIVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHP 404


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 287 SARQCSKYTHSESRFFRSNSFIDLSDVFS 201
           +A QCSK  HS + F+   + I+LS+V +
Sbjct: 97  AADQCSKLVHSSNLFYNEPA-IELSNVIN 124


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 168 KDADVLAVQDLREHIRQIDKAVTSKEPRFA-MRVLRALPST 287
           ++  +  + D++E  R  D    +K+PRF+  R+LR +  T
Sbjct: 124 EELSIKVIWDVKEESRLKDTVAYAKDPRFSKQRLLRMIVPT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,149
Number of Sequences: 5004
Number of extensions: 55191
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)