Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4i04
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387...    85   4e-17
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826...    74   1e-13
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821...    31   1.2  
04_03_0245 - 13331603-13332111,13332653-13333025                       30   1.6  
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637...    30   2.2  
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335...    29   3.8  
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887...    29   5.0  
01_06_0966 - 33453963-33456692                                         28   8.7  

>09_06_0131 -
           21037698-21038210,21038293-21038532,21038679-21038789,
           21038872-21038926,21039074-21039210,21039284-21039421,
           21040304-21040494,21040625-21040703
          Length = 487

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
 Frame = +3

Query: 99  EDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 278
           EDVEM + +   A +    A          +Q L+E    I+    +KE R   R +R  
Sbjct: 3   EDVEMNDSQPQPAAAPPPAAST--------LQHLKEIASVIEAGSLTKEVRRISRAVRLT 54

Query: 279 PSTRRKLNGNVLRAIINQIYPASAEKETILSFVENPLPGA---VEIEAPRSRSAPKQPVP 449
            + RR+L    + A +    P S+E    LS +     G+   V++ AP ++ + K  +P
Sbjct: 55  VALRRRLAARDVAAFLAFALPHSSEAFARLSSLLPKEDGSEMDVDLAAPAAQVSIKHGLP 114

Query: 450 EVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFELT 629
           E++ Y               +EA  C+   +T++   NRRT+D++A++ + Y+S V ELT
Sbjct: 115 EIEIYCYLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVHELT 174

Query: 630 NKLDVIRGLLHARLRTSTLRNDYEGQAVIIN 722
           + L  IRG L A  R +TL  D  GQ  ++N
Sbjct: 175 SSLAEIRGTLLALHRMATLHRDELGQETLLN 205


>08_02_1505 -
           27581466-27581978,27582054-27582293,27582527-27582637,
           27582732-27582786,27582880-27583016,27583092-27583229,
           27583293-27583355,27584379-27584569,27584657-27584732
          Length = 507

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 16/223 (7%)
 Frame = +3

Query: 102 DVEMKNVESPAAVSDVETAD----VKKDADVLAVQDLREHIRQIDKAV---TSKEPRFAM 260
           DV+M + E  AA      A     +K+ A V+    L + +R+I +AV    +   R A 
Sbjct: 3   DVQMSDSEPQAAPPAAPAASALHHLKEIASVIEAGSLSKEVRRISRAVRLTVALRRRLAA 62

Query: 261 RVLRALPSTRRKLNGNVLRAIINQIYPASAEKETILSFV---------ENPLPGAVEIEA 413
           R + A  +     +      + + +   S      L F          E+     +++ A
Sbjct: 63  RDVSAFLAFALPPSSEAYTRLTSLVPKGSGPGSLTLLFHCVYNDIIRREDDTEMDIDMAA 122

Query: 414 PRSRSAPKQPVPEVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAK 593
           P ++ + K  +PE++ Y               ++A  C+   + ++   NRRT+D++A++
Sbjct: 123 PATQISIKHGLPEIEIYCYLLVLIFLIDQKKYDDAKACANASIARLKNLNRRTVDVLASR 182

Query: 594 CYFYHSRVFELTNKLDVIRGLLHARLRTSTLRNDYEGQAVIIN 722
            YFY+S V ELTN L  IRG L A  R +TL  D  GQ  ++N
Sbjct: 183 LYFYYSYVHELTNSLAEIRGNLLALHRMATLHRDELGQETLLN 225


>10_08_0883 +
           21279913-21280235,21281066-21281327,21281998-21282199,
           21282289-21282436,21282541-21283084
          Length = 492

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 594 CYFYHSRVFELTNKLDVIRGLLHARLRTSTLRNDYEGQAVIINC 725
           CYF H+ +F L   +DV +G+LH  L      +D   Q  ++ C
Sbjct: 185 CYF-HTGLFVLQPSMDVFKGMLH-DLEIGRANSDGADQGFLVGC 226


>04_03_0245 - 13331603-13332111,13332653-13333025
          Length = 293

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 363 ILSFVENPLPGAVEIEAPRSRSAPKQPVPEVDTY 464
           +L  V+N LPG  E   PR R  PKQP  ++D Y
Sbjct: 106 LLKLVKNILPGG-ETNCPRQR--PKQPGNDIDVY 136


>04_03_1033 +
           21861826-21863046,21863153-21863380,21863474-21863704,
           21863808-21864070,21864189-21864660
          Length = 804

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 6/140 (4%)
 Frame = +3

Query: 261 RVLRALPSTRRKL-----NGNVLRAIINQIYPASAEKETILSFVENPLPGAVEIEAPRSR 425
           R+  AL  TR K      NGN L A +  +    +   +  SF    LPGA    +P S 
Sbjct: 248 RMNSALSDTRSKFFEAKENGNPLAASVANVSTPLSIGSSGSSFTAQSLPGAA--SSPSSS 305

Query: 426 SAPKQPVPEVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKV-TTQNRRTLDLIAAKCYF 602
           S  KQP                      +  +   ++   KV +T  +   DL+      
Sbjct: 306 SLMKQPTDNEQMLNEMLHEDDVSFGGNSDNVSSAEKEFQAKVKSTMEKAFWDLVTDSMKG 365

Query: 603 YHSRVFELTNKLDVIRGLLH 662
                 +L N +  +R  LH
Sbjct: 366 DKPDYTQLINLVKEVRDSLH 385


>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
            16033714-16033866,16034277-16034702,16035922-16037668,
            16037687-16038183,16038519-16038709,16038786-16038941,
            16040077-16040311,16040416-16040723,16041279-16041439,
            16041852-16041895,16041975-16042067
          Length = 1751

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 264  VLRALPSTRRKLNGNVLRAIINQIYPASAEKETILSFVENPLPGAVEIEAPR 419
            VL   P +R K +  + + +  ++ P  A +ET+ SF+ + L  A++IE  R
Sbjct: 1108 VLSHYPVSRDKKSNELKQTVATKL-PDIALRETLTSFIRDELENALKIEVGR 1158


>02_02_0315 +
           8872199-8872815,8873141-8873243,8873346-8873405,
           8873558-8873632,8873718-8873792,8873876-8873956,
           8874466-8874657,8874762-8874947,8875047-8875094
          Length = 478

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +3

Query: 180 VLAVQDLREHIRQIDKAVTSK-EPRFAMRVLRALPSTRRKLNGNVLRAIINQIYPASAEK 356
           ++  +D +  ++QID     K  P+  +  ++ +        G   +  I +  PA+AE 
Sbjct: 306 LIYAEDRKRTLKQIDDFFNKKVAPKELVDEIKEIGQALLPSTGTKSQPAITEAAPATAEA 365

Query: 357 ETILSFVENPLPGAVEIEAPRSRSAPKQPVP 449
               +      P A  +E   + +AP +P P
Sbjct: 366 APAAA-TATAAPPAAPVEETSTEAAPAEPTP 395


>01_06_0966 - 33453963-33456692
          Length = 909

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 663 HVRDL*SHPTC*LVQTLLSDKNSILQQSSQGFFDF 559
           ++ +L   P C L++TL+   N  L +   GFF F
Sbjct: 517 NILELYERPNCPLLKTLMLQVNPALDKICDGFFQF 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,329
Number of Sequences: 37544
Number of extensions: 318345
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)