Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4i04
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 92 4e-19
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 0.63
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 1.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 1.5
AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical ... 30 1.9
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 29 2.6
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 29 2.6
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 29 2.6
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 29 2.6
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 29 2.6
Z48809-8|CAA88748.2| 535|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48795-8|CAA88732.2| 535|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z82280-2|CAB05262.1| 161|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical pr... 28 7.8
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 91.9 bits (218), Expect = 4e-19
Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 12/223 (5%)
Frame = +3
Query: 87 MAP-VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMR 263
MAP + ++ +E A DV + KD + +AV++++E + +DK E R
Sbjct: 1 MAPKTGETVVEKMEVDEAKQDVPATEPAKDLNAIAVENIKEQLAALDKG----EEHLITR 56
Query: 264 VLRALPSTRRKLNGNVLRAIINQIYPASAE-KETILSFVE---------NPLPGA-VEIE 410
VL+ LP TR+++N NVL +++ + A+ E +L ++ P+ + V+ +
Sbjct: 57 VLQVLPKTRKQINDNVLYKLVSSHLSSDAQFAEGMLKYLHYTPAADTEVQPMDTSNVKTK 116
Query: 411 APRSRSAPKQPVPEVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAA 590
+P+ P PE D Y EA + +T + +RRTLD +AA
Sbjct: 117 SPKKGVKPVFASPESDCYLRLLVLLHLYAQKKNTEALALGENQLTSIYNFDRRTLDGLAA 176
Query: 591 KCYFYHSRVFELTNKLDVIRGLLHARLRTSTLRNDYEGQAVII 719
K ++ ++E +L +G L++RLRT+TLRN E QAV+I
Sbjct: 177 KTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLI 219
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +3
Query: 114 KNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDK 227
++VE + V + DV+KD+DVL Q+++ IRQI++
Sbjct: 521 EDVEQEKIIPTVPSQDVQKDSDVLK-QEVKSKIRQIER 557
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 114 KNVESPAAVSDVETADVKKDADVLAVQDLREHIRQ 218
K VES A + A KDAD L++QD ++ +++
Sbjct: 10795 KKVESGEATGQINDASNNKDADELSIQDSQQSLKK 10829
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 114 KNVESPAAVSDVETADVKKDADVLAVQDLREHIRQ 218
K VES A + A KDAD L++QD ++ +++
Sbjct: 10795 KKVESGEATGQINDASNNKDADELSIQDSQQSLKK 10829
>AC006676-6|AAK71384.2| 652|Caenorhabditis elegans Hypothetical
protein M04F3.5 protein.
Length = 652
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 457 STSGTGCLGALRDLGASISTAPGRGFSTKDSM 362
S G C+G++RDL ++ +T P FS++D M
Sbjct: 234 SEDGYSCMGSIRDL-STRATTPASNFSSEDGM 264
>AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical
protein Y38C1AA.9 protein.
Length = 174
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIR-QIDKAVTS 239
V+DV K + +SDVE + + D++E ++ ++DKAV S
Sbjct: 30 VDDVGNKTISGEVEISDVEAEEKTDKKREVDANDIQEEVKAELDKAVES 78
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKA---VTSKEPRFAMRV 266
+ D++ E A+ + D++ D + ++ +REH+R+++ A V + +MR+
Sbjct: 770 IADIQKSAKELSQALYSQKLTDLRDKRDRVVLEAIREHVRELEIAESRVMTYANETSMRM 829
Query: 267 LRALP-STRRKLNGNVLRAIINQI 335
A R+++ +V + I NQ+
Sbjct: 830 QAASEVGDLRRISNSVCKLIDNQL 853
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKA---VTSKEPRFAMRV 266
+ D++ E A+ + D++ D + ++ +REH+R+++ A V + +MR+
Sbjct: 770 IADIQKSAKELSQALYSQKLTDLRDKRDRVVLEAIREHVRELEIAESRVMTYANETSMRM 829
Query: 267 LRALP-STRRKLNGNVLRAIINQI 335
A R+++ +V + I NQ+
Sbjct: 830 QAASEVGDLRRISNSVCKLIDNQL 853
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKA---VTSKEPRFAMRV 266
+ D++ E A+ + D++ D + ++ +REH+R+++ A V + +MR+
Sbjct: 770 IADIQKSAKELSQALYSQKLTDLRDKRDRVVLEAIREHVRELEIAESRVMTYANETSMRM 829
Query: 267 LRALP-STRRKLNGNVLRAIINQI 335
A R+++ +V + I NQ+
Sbjct: 830 QAASEVGDLRRISNSVCKLIDNQL 853
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73B protein.
Length = 1638
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKA---VTSKEPRFAMRV 266
+ D++ E A+ + D++ D + ++ +REH+R+++ A V + +MR+
Sbjct: 770 IADIQKSAKELSQALYSQKLTDLRDKRDRVVLEAIREHVRELEIAESRVMTYANETSMRM 829
Query: 267 LRALP-STRRKLNGNVLRAIINQI 335
A R+++ +V + I NQ+
Sbjct: 830 QAASEVGDLRRISNSVCKLIDNQL 853
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 96 VEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKA---VTSKEPRFAMRV 266
+ D++ E A+ + D++ D + ++ +REH+R+++ A V + +MR+
Sbjct: 770 IADIQKSAKELSQALYSQKLTDLRDKRDRVVLEAIREHVRELEIAESRVMTYANETSMRM 829
Query: 267 LRALP-STRRKLNGNVLRAIINQI 335
A R+++ +V + I NQ+
Sbjct: 830 QAASEVGDLRRISNSVCKLIDNQL 853
>Z48809-8|CAA88748.2| 535|Caenorhabditis elegans Hypothetical
protein T01E8.1 protein.
Length = 535
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 211 SDKSIKLLLRKNLDSLCVYLEHCRAL 288
+ + I+ LL KN C+YL HCR+L
Sbjct: 149 TSQGIRTLLIKNPTIGCLYLNHCRSL 174
>Z48795-8|CAA88732.2| 535|Caenorhabditis elegans Hypothetical
protein T01E8.1 protein.
Length = 535
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 211 SDKSIKLLLRKNLDSLCVYLEHCRAL 288
+ + I+ LL KN C+YL HCR+L
Sbjct: 149 TSQGIRTLLIKNPTIGCLYLNHCRSL 174
>Z82280-2|CAB05262.1| 161|Caenorhabditis elegans Hypothetical
protein R05A10.2 protein.
Length = 161
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 102 DVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRALP 281
++E+K + PAA +D+E D ++D R H+ I T M V+ L
Sbjct: 75 EIEVKKADKPAAENDLEKFDKGLNSDKKEYVQKRSHVDSISTNSTENLSDDEMDVMAHLN 134
Query: 282 ST 287
T
Sbjct: 135 KT 136
>Z81592-2|CAB04726.1| 407|Caenorhabditis elegans Hypothetical
protein T16G1.2 protein.
Length = 407
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +3
Query: 144 DVETADVKK--DADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLR 317
D E D KK D DV+ ++ +H R I++ S +PR + + +T + N
Sbjct: 111 DAEKHDEKKMSDNDVITNEEAEDHARGIERTTMSIKPREG-EITEPMTTTTQMPEHN--- 166
Query: 318 AIINQIYPASAEKETILSFVENPLPGAVEIEAPRSRSAPKQPVP 449
IN+I S + +F + ++ P QP P
Sbjct: 167 -SINEIRENSIQPVRPKTFFQTVTANGSNAPPNQNAQLPLQPQP 209
>Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical
protein F14H8.6 protein.
Length = 695
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 104 IFHWSHCIYN*YFSKQCEYENERNQSTNFSKKK 6
IFHW+ C+Y Y SK Y R + FS K
Sbjct: 256 IFHWNGCLYF-YISKVYNYTTARLEHWIFSYDK 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,155
Number of Sequences: 27780
Number of extensions: 308099
Number of successful extensions: 926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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