Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4i03
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 138 7e-34
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 30 0.26
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.0
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.2
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.5
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 26 5.5
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 25 7.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.6
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 25 9.6
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 138 bits (334), Expect = 7e-34
Identities = 68/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Frame = +3
Query: 192 LPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLV 371
LPLAA++ +DE + N+ ++ QAK++ ++LSP S R SIE+G Y FHYLI+N ICYL
Sbjct: 7 LPLAASV-DDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLC 65
Query: 372 LCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTRKQYAEXXXX 548
+CE++Y ++LAF+YLEE+A EF+ +G L RPY F++FDT MQ++++ Y
Sbjct: 66 ICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVY----NT 121
Query: 549 XXXXXXXSHLAPQLGDVQRIMMQNIDDVLQRG 644
L +L DV R+M +NI+D+L RG
Sbjct: 122 PRANDNLDKLNTELKDVTRVMTKNIEDLLYRG 153
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 366 LVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQR 515
+V+ NY + + YLE + +F+ Y R +VT P D +QR
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLPRLKTVGDMTIQR 214
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 333 FHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRL 461
FHY+ E HIC++ YS AF+ + +A+E +G R+
Sbjct: 437 FHYIPEKHICFVTFI--TYSAANAFH--DYLAEEEVLLHGRRI 475
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +3
Query: 339 YLIENHI---CYLVLCERNYSK--RLAFNYLEEIAQEFFQQY 449
YL++N + C+ L K L++NYL EI +FFQ +
Sbjct: 812 YLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNF 853
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 348 ENHICYLVLCERNYSKRLAFNYLEEIAQEFF 440
E+H C L+L E + +K LA + L + ++++
Sbjct: 495 ESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -2
Query: 371 DQITYVIFNQIMEEIRAGFNGTSHRGLRA*FPKQHFSLILVLEYIAP 231
D+ T V+ N + A F+ TSH+GL+A F ++F + +V + I P
Sbjct: 371 DEDTEVMMNA-RSLLPAEFSMTSHQGLKAHF--RNFMMFIVQQAIDP 414
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 345 IENHICYLVLCERNYSKRLAFNY 413
I+N L E NYSKRL FN+
Sbjct: 289 IDNSKFINYLIEENYSKRLEFNF 311
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Frame = -1
Query: 378 HTGP-NNICDFQSNNG--RDTGRF 316
+TG N+IC+FQS +G +TGRF
Sbjct: 638 YTGDGNDICEFQSRSGFCVETGRF 661
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 408 NYLEEIAQEFFQQYGHRLNTVTRPYTF 488
NY + + E +QY +N+ TRP F
Sbjct: 554 NYFKSLKAELNRQYAAAVNSGTRPLLF 580
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 165 SLTPYLKLKCLSLKHKIYVIEFNFNLRFFPSHSFENMKKT 46
S+ PYL+++ S KH Y+ F+ S + +K T
Sbjct: 54 SVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKST 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,260
Number of Sequences: 5004
Number of extensions: 41979
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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