Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4i03
(657 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein. 199 8e-51
BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficki... 105 1e-22
X92396-1|CAA63133.1| 220|Homo sapiens ORF protein. 64 6e-10
BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1 pr... 64 6e-10
AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1 va... 64 6e-10
AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1 pr... 64 6e-10
BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficki... 60 7e-09
BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficki... 60 7e-09
AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein. 60 7e-09
AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking pro... 60 7e-09
AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like prot... 55 2e-07
AJ549301-1|CAD70593.2| 179|Homo sapiens tetanus insensitive VAM... 40 0.008
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 31 3.6
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 31 3.6
U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein. 31 3.6
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 31 3.6
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 31 3.6
AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich sp... 31 3.6
>BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein.
Length = 215
Score = 199 bits (485), Expect = 8e-51
Identities = 96/168 (57%), Positives = 126/168 (75%)
Frame = +3
Query: 153 MVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYL 332
MVL+TMIARVADGLPLAA+MQEDEQSG ++ +YQ+QAK LFRKL+ QSP RC++E G
Sbjct: 1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60
Query: 333 FHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQ 512
FHY+IE +CYLVLCE + K+LAF YLE++ EF +Q+G ++ TV+RPY+FIEFDT +Q
Sbjct: 61 FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQ 120
Query: 513 RTRKQYAEXXXXXXXXXXXSHLAPQLGDVQRIMMQNIDDVLQRGAILS 656
+T+K Y + + +L DVQRIM+ NI++VLQRG LS
Sbjct: 121 KTKKLYID----SRARRNLGSINTELQDVQRIMVANIEEVLQRGEALS 164
>BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficking
protein homolog A (S. cerevisiae) protein.
Length = 307
Score = 105 bits (253), Expect = 1e-22
Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Frame = +3
Query: 147 LNMVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGP 326
++M+L + RV DGLPL+A+ ++ +G E + KML RKL+ Q P RC+++TG
Sbjct: 1 MSMILSASVIRVRDGLPLSASTDYEQSTGMQ--ECRKYFKMLSRKLA-QLPDRCTLKTGH 57
Query: 327 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG-HRLNTVTRPYTFIEFDT 503
Y +++ + Y++LC NY LAF++L+E+ +EF Y + NT RPY FIEFD
Sbjct: 58 YNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDN 117
Query: 504 CMQRTRKQY 530
+QRT+++Y
Sbjct: 118 FIQRTKQRY 126
>X92396-1|CAA63133.1| 220|Homo sapiens ORF protein.
Length = 220
Score = 63.7 bits (148), Expect = 6e-10
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +3
Query: 231 GCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFN 410
G N LE Q + K+ P + + G YLFHY+ ++ I YL + + ++ + AFN
Sbjct: 22 GGNFLEVTEQ---ILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFN 77
Query: 411 YLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQ 587
+L EI + F YG R T PY EF + + K ++E + Q
Sbjct: 78 FLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA----Q 132
Query: 588 LGDVQRIMMQNIDDVLQRG 644
+ +++ IM++NID V QRG
Sbjct: 133 VDELKGIMVRNIDLVAQRG 151
>BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1
protein.
Length = 220
Score = 63.7 bits (148), Expect = 6e-10
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +3
Query: 231 GCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFN 410
G N LE Q + K+ P + + G YLFHY+ ++ I YL + + ++ + AFN
Sbjct: 22 GGNFLEVTEQ---ILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFN 77
Query: 411 YLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQ 587
+L EI + F YG R T PY EF + + K ++E + Q
Sbjct: 78 FLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA----Q 132
Query: 588 LGDVQRIMMQNIDDVLQRG 644
+ +++ IM++NID V QRG
Sbjct: 133 VDELKGIMVRNIDLVAQRG 151
>AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1
variant protein.
Length = 220
Score = 63.7 bits (148), Expect = 6e-10
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +3
Query: 231 GCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFN 410
G N LE Q + K+ P + + G YLFHY+ ++ I YL + + ++ + AFN
Sbjct: 22 GGNFLEVTEQ---ILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFN 77
Query: 411 YLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQ 587
+L EI + F YG R T PY EF + + K ++E + Q
Sbjct: 78 FLNEIKKRFQTTYGSRAQTAP-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA----Q 132
Query: 588 LGDVQRIMMQNIDDVLQRG 644
+ +++ IM++NID V QRG
Sbjct: 133 VDELKGIMVRNIDLVAQRG 151
>AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1
protein protein.
Length = 220
Score = 63.7 bits (148), Expect = 6e-10
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Frame = +3
Query: 231 GCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFN 410
G N LE Q + K+ P + + G YLFHY+ ++ I YL + + ++ + AFN
Sbjct: 22 GGNFLEVTEQ---ILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFN 77
Query: 411 YLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQ 587
+L EI + F YG R T PY EF + + K ++E + Q
Sbjct: 78 FLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA----Q 132
Query: 588 LGDVQRIMMQNIDDVLQRG 644
+ +++ IM++NID V QRG
Sbjct: 133 VDELKGIMVRNIDLVAQRG 151
>BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 250
Score = 60.1 bits (139), Expect = 7e-09
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 147 LNMVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGP 326
++++ + RV DGLPL+A+ D + LE++ + K L +L+ Q P R S E
Sbjct: 1 MSVIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRLA-QYPGRGSAEGCD 57
Query: 327 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDT 503
+ H+ + + +C +AF +LE + EF Y + +RPY F+EFD+
Sbjct: 58 FSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDS 117
Query: 504 CMQRTR 521
+Q+ +
Sbjct: 118 IIQKVK 123
>BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 303
Score = 60.1 bits (139), Expect = 7e-09
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 147 LNMVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGP 326
++++ + RV DGLPL+A+ D + LE++ + K L +L+ Q P R S E
Sbjct: 1 MSVIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRLA-QYPGRGSAEGCD 57
Query: 327 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDT 503
+ H+ + + +C +AF +LE + EF Y + +RPY F+EFD+
Sbjct: 58 FSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDS 117
Query: 504 CMQRTR 521
+Q+ +
Sbjct: 118 IIQKVK 123
>AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein.
Length = 228
Score = 60.1 bits (139), Expect = 7e-09
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 147 LNMVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGP 326
++++ + RV DGLPL+A+ D + LE++ + K L +L+ Q P R S E
Sbjct: 1 MSVIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRLA-QYPGRGSAEGCD 57
Query: 327 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDT 503
+ H+ + + +C +AF +LE + EF Y + +RPY F+EFD+
Sbjct: 58 FSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDS 117
Query: 504 CMQRTR 521
+Q+ +
Sbjct: 118 IIQKVK 123
>AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking
protein protein.
Length = 250
Score = 60.1 bits (139), Expect = 7e-09
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 147 LNMVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGP 326
++++ + RV DGLPL+A+ D + LE++ + K L +L+ Q P R S E
Sbjct: 1 MSVIFFACVVRVRDGLPLSAST--DFYHTQDFLEWRRRLKSLALRLA-QYPGRGSAEGCD 57
Query: 327 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDT 503
+ H+ + + +C +AF +LE + EF Y + +RPY F+EFD+
Sbjct: 58 FSIHFSSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDS 117
Query: 504 CMQRTR 521
+Q+ +
Sbjct: 118 IIQKVK 123
>AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like protein
1B protein.
Length = 260
Score = 55.2 bits (127), Expect = 2e-07
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Frame = +3
Query: 231 GCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFN 410
G N LE Q + K+ P + + G YLFHY+ ++ I YL + + ++ + AFN
Sbjct: 22 GGNFLEVTEQ---ILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFN 77
Query: 411 YLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQ 587
+L EI + F YG R T PY EF + + K ++E + Q
Sbjct: 78 FLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA----Q 132
Query: 588 LGDVQRIMMQNI 623
+ +++ IM++NI
Sbjct: 133 VDELKGIMVRNI 144
>AJ549301-1|CAD70593.2| 179|Homo sapiens tetanus insensitive VAMP
(Ti-VAMP) protein.
Length = 179
Score = 39.9 bits (89), Expect = 0.008
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 384 NYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXX 560
++ + AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 28 DFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVM 86
Query: 561 XXXSHLAPQLGDVQRIMMQNIDDVLQRG 644
+ Q+ +++ IM++NID V QRG
Sbjct: 87 ETQA----QVDELKGIMVRNIDLVAQRG 110
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>U30828-1|AAA93071.1| 135|Homo sapiens SRp55-2 protein.
Length = 135
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 43
>AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich
splicing factor 6 variant protein.
Length = 279
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 RNYSKRLAFNYLEEIAQEFFQQYGHRLNT-VTRPYTFIEFD 500
R Y RL++N E+ Q FF YG L + Y F+EF+
Sbjct: 37 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFE 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,276,071
Number of Sequences: 237096
Number of extensions: 1434340
Number of successful extensions: 11063
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11046
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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