Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h24
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    29   0.36 
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    28   0.83 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   1.4  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   1.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   4.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   5.8  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   5.8  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   7.7  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 223 RIRKDSSQKPLACTNFRKIFEKSCPTQWVTHFDRKRDFNVF 345
           R  K   +  + C  F   ++  CP +WV  +D +R+   F
Sbjct: 39  RCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = -3

Query: 262 YKLMVSVNCPSVF*ESKHSQYLSLASQHFFLCSLSGKDILIYVN*NQNLDKASDRFRIFP 83
           Y L+   +CP+   E+  + Y++   +HF +C   G ++ +YV+   + +  S     +P
Sbjct: 141 YTLLYMPHCPTSLYETWLAAYVNDDPRHFIMC---GNNLQLYVDNKPSKEIVS----TYP 193

Query: 82  NIY 74
           N+Y
Sbjct: 194 NVY 196


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 344 NTLKSRFLSKCVTHW---VGQDFSNIFLKFVQANGFCELS 234
           N L+ + LS   T W   +G ++ N+++KF+    F  L+
Sbjct: 746 NLLEKQLLSYNFTDWFASLGSEYENVYVKFISHYDFSSLN 785


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 118 LDKASDRFRIFPNIYLNV 65
           +DKA+D+F + PN+ LN+
Sbjct: 11  IDKATDQFNLEPNLALNI 28


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 274 KIFEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDSQ 393
           K F K   TQ   HF++KR+      K QK+  +  KD +
Sbjct: 274 KEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEE 313


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 280 FEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDS 390
           FEK C      +F + +D  + ++ ++KE ++ +KD+
Sbjct: 355 FEKYCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDN 391


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 235 DSSQKPLACTNFRKIF-EKSCPTQWVTHFDRKRDFNVFKEK---MQKEGYEPIKDSQ*IC 402
           D S  P   T   +I   +  P ++ T F  +      +E+   + K G E +KDS+ +C
Sbjct: 29  DCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETLKDSESLC 88

Query: 403 LKN 411
           + N
Sbjct: 89  ILN 91


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 220 LRIRKDSSQKPLACTNFRKIFEKSCPTQWVTHFDRKRDFNVFKEK 354
           L I  D+ +  L   N  K+  +  P +  ++ +  ++FN+FKEK
Sbjct: 214 LLILNDAREFSLTFLNTLKL-ARDFPNEIRSYLEASKNFNIFKEK 257


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 TLGKYLKSPALPNGLRILIENEISMYLKKKCKKRVM 373
           T+G  L   A+P GL I++   +++ + +  KKR +
Sbjct: 275 TIGVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAI 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,015
Number of Sequences: 5004
Number of extensions: 39364
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)