Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h24
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0815 + 21493696-21493812,21493912-21494049,21494134-21494250     30   0.82 
01_05_0536 - 23011618-23011635,23011871-23012052,23012160-230123...    30   0.82 
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    30   1.1  
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    29   1.4  
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    29   2.5  
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     27   5.8  
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     27   7.6  
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720...    27   7.6  

>08_02_0815 + 21493696-21493812,21493912-21494049,21494134-21494250
          Length = 123

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +1

Query: 250 PLACTNFRKIFEKSCPTQWVTHFDRK 327
           P  C   R  F  SC   WV HFDR+
Sbjct: 67  PADCKKSRANFVNSCRPSWVKHFDRQ 92


>01_05_0536 -
           23011618-23011635,23011871-23012052,23012160-23012396,
           23012480-23012593,23012806-23013025,23013143-23013229
          Length = 285

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 265 NFRKIFEKSCPTQWVTHFDRK-RDFNVFKEKMQKEG 369
           NF K  EK    +W+  +D+K R+F V  E+ QK+G
Sbjct: 143 NFTKEQEKEIMRKWLETYDKKNREFMVACEEFQKQG 178


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 223 RIRKDSSQKPLACTNF-RKIFEKSCPTQW-VTHFDRKR 330
           R+R  +SQ+P  C NF  K   K+CP Q  +  ++RK+
Sbjct: 44  RLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKK 81


>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 259 CTNFRKIFEKSCPTQWVTHFDRKRDFNVF 345
           C  F K +   CP++W+  ++ +R+   F
Sbjct: 223 CEKFAKYYRSLCPSEWIERWNEQRENGTF 251


>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 259 CTNFRKIFEKSCPTQWVTHFDRKRDFNVF 345
           C  F K +   CP +WV  ++ +R+   F
Sbjct: 137 CDKFAKYYRSLCPGEWVERWNEQRENGTF 165


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 213 STPSIYLWRPSTFFFALYQERTSLST*IEIKT 118
           S   I  W PST   AL   RTSLST  + K+
Sbjct: 335 SAALIQFWNPSTPVEALLNRRTSLSTFTKAKS 366


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 259 CTNFRKIFEKSCPTQWVTHFDRKRDFNVF 345
           CT + K +   CP +W+  +  +R    F
Sbjct: 19  CTKYAKCYRSLCPGEWIERWKEQRANGTF 47


>01_06_0237 +
           27770777-27771120,27771209-27771438,27771951-27772092,
           27772266-27772281
          Length = 243

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 152 GHPYLRKLKSKLRQS*R*VSYIPKYLFKCFI 60
           G PYLRK+  K+  S   +S   + +F CFI
Sbjct: 160 GAPYLRKVDLKMYSSYEDLSMALEKMFSCFI 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,119,561
Number of Sequences: 37544
Number of extensions: 194902
Number of successful extensions: 435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)