Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h24
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 195 DKYWECLDSQNTEGQFTET 251
           D YW C+   NT  +  +T
Sbjct: 528 DDYWNCVIQYNTRAENHQT 546


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 222 ESLSTPSIYLWRPSTFFF 169
           E L  PS ++WRP    +
Sbjct: 97  EMLHVPSDHIWRPDIVLY 114


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 329 EISMYLKKKCKK 364
           EI MY+++KC++
Sbjct: 230 EIDMYMRRKCQE 241


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 329 EISMYLKKKCKK 364
           EI MY+++KC++
Sbjct: 27  EIDMYMRRKCQE 38


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 195 LWRPSTFFF 169
           +WRP T+F+
Sbjct: 117 IWRPDTYFY 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 235 DSSQKPLACTNFRKIF 282
           +++ K L C N+RK++
Sbjct: 93  NNNYKKLYCNNYRKLY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,875
Number of Sequences: 438
Number of extensions: 2580
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)