Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h22
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 45 1e-05
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 28 1.2
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 28 1.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.7
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 3.7
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 26 4.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.9
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 26 4.9
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 26 6.5
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 25 8.6
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 45.2 bits (102), Expect = 1e-05
Identities = 44/212 (20%), Positives = 92/212 (43%), Gaps = 5/212 (2%)
Frame = +3
Query: 108 SEIRQTRINWQSYLQSQMITQRDHDFIVNLDQR---GQKDLPDKNPDACAEVFLNLLTHI 278
+ +R I WQ Y +S + + + I NL + +++ A + +FL LL+
Sbjct: 29 NNVRCVAIPWQGYQRSGSLEENELQEIENLTGKPLSAYVKTAEEDTTAYSNLFLKLLSMK 88
Query: 279 SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIA 458
+ + LV + D L + F + + + + +N D+ + + AR+ A
Sbjct: 89 DTPDVVNFALVKLADTLLNSNKFLSAFGPAFY--DFLEKDESYINYLDDDSKLLFARVFA 146
Query: 459 KLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGI 638
+ P + K+ +L +L +++ N +CL +L + +R+A + +
Sbjct: 147 LCSSSSPCSVAKA-FTLFLEYLGKLMQSLNPLTRLFAVQCLNGVLTLKAHRYALWAENTC 205
Query: 639 S-TLLSILASRV-NFQVQYQLVFCLWGFDIQS 728
S L +L + + + Q+QY +FC W +S
Sbjct: 206 SFRLAELLRNSIGDTQLQYYSLFCFWQLTFES 237
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 605 FIDTQHHLQTPGHRLDIVVVIGLELIFKPGEIEV 504
F D HH + G+ L ++ ++GLE+ ++ ++++
Sbjct: 397 FYDELHHHRVSGYSLKMIRLVGLEMAYRFRQLDI 430
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 670 TLEARIDSKVDIP-STERKAKRYSSIRSIICRHRATDWI 557
TLE + K + ST + +RYS+ ++ H A++W+
Sbjct: 566 TLELSLSMKKALTLSTNERNQRYSNCLDVVLTHSASNWV 604
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +3
Query: 354 IFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK-SDLHFYLSWLKD 530
I+R + S + + N+ N D F+Q + ++ L +P++ DK SDL + D
Sbjct: 248 IYRIRQLSTSTYSSEHNIGNISDPFLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTD 307
Query: 531 QLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILASRVN 674
+ N + R + +D + L V G++ L L +R N
Sbjct: 308 SSRNAGNAILYQAVRTI-----LDLNSDSSLRVLGVNILAKFLGNRDN 350
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 363 ETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKT 542
E++ S + + +LL+ QD+ + ++ ++AKL HP L+ K + +L L +
Sbjct: 58 ESRGSMELLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMDMKFLDRLLLS 117
Query: 543 NNNDYI 560
+ +Y+
Sbjct: 118 THYEYV 123
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 362 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRIL 228
+KY P+F+F K ++E + + +G+ + M V + G I +L
Sbjct: 46 SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.9
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Frame = +3
Query: 51 QMVNISDMIAATSVLQIRASEIRQTRINWQS---YLQSQMITQRDHDFIVNLDQRGQKDL 221
Q+ SD LQ +I Q+ NW YL + ++ + F+ + D + D
Sbjct: 613 QLTTFSDFQLKLKTLQC-VLDILQSLSNWAESGLYLSRRGVSTDEQGFVGDYDALSRSDT 671
Query: 222 PDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFL 401
P NP + + + H+ I + +K R K+ R T + ++P
Sbjct: 672 PVTNP-----YYNGKQSFEANSHSSSSIALADPSQFESNKQRKKLLR-TCINKFNYKPTR 725
Query: 402 NL-LNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYL 515
L + ++E+V + IA+ + +DK+ L YL
Sbjct: 726 GLKMLSENEYVDINDPKAIAEF-LFRADGIDKTTLGDYL 763
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 327 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 491
L DK+++K+F E K ++ P N++ D F +I +L C H LM+
Sbjct: 76 LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 297 EWCGPC*YASGG*ERLRHRHQ 235
+WCGPC Y E+L ++Q
Sbjct: 45 DWCGPCKYLKPFLEKLSEQNQ 65
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -3
Query: 108 LPGSVGRWWPQSCLKYLPFAKFYRDENFC 22
+P G+WW L YLP Y + C
Sbjct: 219 IPFHPGKWWCHVRLVYLPMGYMYGERLKC 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,396
Number of Sequences: 5004
Number of extensions: 65168
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -