Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h22
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpa... 203 1e-52
U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical p... 138 4e-33
U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.5
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 1.5
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 1.5
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 1.5
Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical p... 29 2.6
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 3.5
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 3.5
>U50199-6|AAA91266.1| 470|Caenorhabditis elegans Vacuolar h atpase
protein 15 protein.
Length = 470
Score = 203 bits (495), Expect = 1e-52
Identities = 99/223 (44%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Frame = +3
Query: 69 DMIAATSVLQIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDK-----N 233
DM+ ATS LQ+ A E+R + NW SY +SQMI + D++FI + + K+ D+ N
Sbjct: 13 DMLNATSRLQLEAQELRNNKPNWGSYFRSQMIQEDDYNFITSFENAKSKEERDQVLAANN 72
Query: 234 PDA-CAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRET--KFSGNVWQPFLN 404
+ A+ NL+T ++KD ++Y+L L DD+L EDKSRV++F + VW +L
Sbjct: 73 ANGQAAKTMANLITQVAKDQNVRYVLTLFDDMLQEDKSRVELFHSAAARQKRTVWSQYLG 132
Query: 405 LLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNN-NDYIQSVARCL 581
+L RQD F+ + + IIAKLAC+ M+ DL +Y S+LK+QLK + NDY+ + ARCL
Sbjct: 133 ILQRQDNFIVNQMSSIIAKLACFGTTRMEGQDLQYYFSFLKEQLKNSTTNDYMNTTARCL 192
Query: 582 QMMLRIDEYRFAFLSVDGISTLLSILASRVNFQVQYQLVFCLW 710
QMMLR DEYR F+ DG+ TL++ L + NFQ+QYQL+F +W
Sbjct: 193 QMMLRHDEYRHEFVDSDGVQTLVTALNGKTNFQLQYQLIFAVW 235
>U41109-12|AAB37043.1| 451|Caenorhabditis elegans Hypothetical
protein F52E1.10 protein.
Length = 451
Score = 138 bits (334), Expect = 4e-33
Identities = 71/214 (33%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Frame = +3
Query: 96 QIRASEIRQTRINWQSYLQSQMITQRDHDFIVNLDQRGQK----DLPDKNPDACAEVFLN 263
Q A ++R + NW + +++MI Q D+DFIV Q + + + F++
Sbjct: 15 QKEADKVRAMKTNWGLFTRTRMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVH 74
Query: 264 LLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETK--FSGNVWQPFLNLLNRQDEFVQH 437
L++ ISKD ++Y L LIDD+L ED +R IF + + + F+ LL+RQD+++ H
Sbjct: 75 LMSQISKDDYVRYTLTLIDDMLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVH 134
Query: 438 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQL-KTNNNDYIQSVARCLQMMLRIDEYRF 614
+T I+ K+A + + +L + + LK+ + + NNDYI + RC+Q + R D YR
Sbjct: 135 ITFSILTKMAVFGNIKLSGDELDYCMGSLKEAMNRGTNNDYIVTAVRCMQTLFRFDPYRV 194
Query: 615 AFLSVDGISTLLSILAS--RVNFQVQYQLVFCLW 710
+F++++G +L L S + FQ+QYQ++FC+W
Sbjct: 195 SFVNINGYDSLTHALYSTRKCGFQIQYQIIFCMW 228
>U64849-2|AAC48051.1| 411|Caenorhabditis elegans Hypothetical
protein K04A8.5 protein.
Length = 411
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 383 VAREFRLTKYLHPRFIFRKNVINEHKNVLNGVVLAD 276
V FR+ Y H FI+ N ++ NV+ G++L D
Sbjct: 373 VQGSFRIENYNHLHFIWGTNAASQVYNVITGIILQD 408
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -3
Query: 450 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 280
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 279 *YASGG*ERLRHRHQDSCQADLFG 208
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -3
Query: 450 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 280
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 279 *YASGG*ERLRHRHQDSCQADLFG 208
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -3
Query: 450 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 280
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 279 *YASGG*ERLRHRHQDSCQADLFG 208
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = -3
Query: 450 CEQSCAGQIHPD-GSA--NSGRAAKRCQRISSHEISSPSIYLQKECHQ*AQECIEWCGPC 280
C+ + A + +P+ GS GR K C + P+ Q +C+Q C G C
Sbjct: 431 CDWNHASECNPETGSCVCKPGRTGKNCSEPCPLDFYGPNCAHQCQCNQRGVGCDGADGKC 490
Query: 279 *YASGG*ERLRHRHQDSCQADLFG 208
G HR + C AD FG
Sbjct: 491 QCDRGW---TGHRCEHHCPADTFG 511
>Z54342-11|CAA91146.1| 502|Caenorhabditis elegans Hypothetical
protein C08H9.5 protein.
Length = 502
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 387 WQPFLNLLNRQDEFVQ--HMTARI--IAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNND 554
W+ L+ LN Q H A I + KL CW + ++ + + + +LKT +N+
Sbjct: 413 WKYVLSYLNEGKRLAQPAHADAEIYNVMKL-CWDLDMNSRTTFLDCIEFFEKELKTTSNE 471
Query: 555 YIQSVARCLQ 584
Y + R L+
Sbjct: 472 YFLDLTRKLR 481
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 423 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLRI 599
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRR 286
Query: 600 D 602
D
Sbjct: 287 D 287
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 423 EFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLK-DQLKTNNNDYIQSVARCLQMMLRI 599
+ V HM A + A L+ + L F ++ D N D++Q + RCL ++LR
Sbjct: 227 DHVNHMVAALCAVADDTGSPLVQRYLLDFLVAAFPLDSTNLTNEDFVQLLRRCLFVVLRR 286
Query: 600 D 602
D
Sbjct: 287 D 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,385
Number of Sequences: 27780
Number of extensions: 379839
Number of successful extensions: 1118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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