Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h21
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0811 - 19909128-19912214 29 0.52
11_02_0150 - 8816714-8817806,8817993-8818126 27 2.1
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 27 2.1
06_01_1064 - 8609162-8610583 27 2.7
06_03_0778 - 24523780-24526353 26 3.6
06_01_1153 - 9745717-9745847,9745993-9746260,9746298-9746324,974... 26 4.8
04_03_0190 + 12448027-12450825 26 4.8
01_06_1671 - 39018929-39019027,39019310-39019439,39019529-390196... 25 6.3
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 25 8.4
06_01_1055 - 8419587-8421065 25 8.4
02_04_0270 - 21439788-21441680 25 8.4
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.1 bits (62), Expect = 0.52
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = -2
Query: 237 FIVTLKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTNHLHCF 82
F L+YN+ S DSLK LH+ C L R I+ R S + SL + L C+
Sbjct: 858 FYKPLEYNDTSNFDSLKHLHLEY--CPRLER-IVPRESALPSLTTLDILFCY 906
>11_02_0150 - 8816714-8817806,8817993-8818126
Length = 408
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 30 HVIMKFLLFCAMCILVYGNSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCP 200
H++ K L C C LV+ N DD + +KH G C CS + + A++ P
Sbjct: 89 HMLSKCLP-CYSCPLVHENDADDAVKSQKWWQKHCGAC----CCSPNPGRDRANEAP 140
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 192 LKLLHISKIDCSSLSRNI--LRRASDIWSLLRTNHLHCFRKLKCTLHK 55
L L K+ CSS + ++ +RA D+W+ + T C C LH+
Sbjct: 367 LPKLRTLKVRCSSTTDDLEGRKRAEDLWNYIGTLISSCNLHHLCILHR 414
>06_01_1064 - 8609162-8610583
Length = 473
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = -2
Query: 240 PFIVTLKYNNHSLRDSLKLLHISKIDCSS------LSRNILRRA 127
P V + N + LR ++ +H+S + CS+ L+RN+L+ A
Sbjct: 178 PSFVDMIVNRYKLRSDIRSMHLSGMGCSASLISIGLARNLLQVA 221
>06_03_0778 - 24523780-24526353
Length = 857
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 148 EKHSPPCFRHLVSFTDKSSSLF 83
E H+PP HL S+TD SSS F
Sbjct: 817 EVHAPP---HLPSYTDSSSSSF 835
>06_01_1153 -
9745717-9745847,9745993-9746260,9746298-9746324,
9746359-9746361
Length = 142
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 30 HVIMKFLLFCAMCILVYGNSED-DLSVKETRCRKHG 134
H++ + C C+ + GNS D L +E +C +G
Sbjct: 91 HIMEDSISTCHDCVSIVGNSTDVRLRAEEEKCSTYG 126
>04_03_0190 + 12448027-12450825
Length = 932
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 174 SKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLK 70
S+ DCS+ + +I SLLRT HCF+ K
Sbjct: 226 SRYDCSAWIAT--SQVYNICSLLRTTIRHCFKNTK 258
>01_06_1671 - 39018929-39019027,39019310-39019439,39019529-39019637,
39020183-39020216,39020376-39021151,39021328-39021464,
39021732-39021876,39021958-39022341,39022435-39023210,
39023609-39023658,39024213-39024262,39024361-39024455,
39024539-39024797,39024943-39024982
Length = 1027
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 84 NSEDDLSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGND 212
N D S+KE C G +G + L+Y++ DC E ND
Sbjct: 893 NMGHDFSLKE--CSDFGSAI--QGVDTDFLMYDDEVDCDEAND 931
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 102 SVKETRCRKHGGECFSKG-YCSQ 167
S K+++C K ECF+ G YCS+
Sbjct: 471 SCKKSKCLKLYCECFAAGVYCSE 493
>06_01_1055 - 8419587-8421065
Length = 492
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = -2
Query: 240 PFIVTLKYNNHSLRDSLKLLHISKIDCSS------LSRNILRRA 127
P + NN+ +R ++ +H+S + CS+ L+RN L+ A
Sbjct: 197 PSFTDMIINNYKMRSDIRNVHLSGMGCSAGLISVGLARNFLQVA 240
>02_04_0270 - 21439788-21441680
Length = 630
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 174 SKIDCSSLSRNILRRASDIWSLLRTNHLHCFRKLK 70
S+ D +SRN +R D +SL T+ LH R+L+
Sbjct: 591 SEDDSYRMSRNGGQRRGDGYSLRPTSELHNSRRLR 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,414,465
Number of Sequences: 37544
Number of extensions: 112679
Number of successful extensions: 249
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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