Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h20
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    64   9e-12
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   1.2  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   1.2  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   2.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   2.8  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    24   6.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   6.4  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 63.7 bits (148), Expect = 9e-12
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 177 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 353
           +LSG+ KYGL  DD  L E  D  +AL RLP     +R +RI RA+QLS++  ILPK EW
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88

Query: 354 TK 359
           TK
Sbjct: 89  TK 90


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 122 HHGSCSKSHFIDSQIYDFNVILT 54
           HHGS SK H I  Q+  ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 182 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFNVILTQTTRNS 36
           K + P ++ +T  N + + SH GS +KSH F    ++D N  ++    N+
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKPVSSDNHNN 368


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 282 RQQHGMEVCGVLQLHQEFHASNHPV 208
           + +HG  VC    L+   H  N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 165 KWAYNLSGFNKYGLLRDD 218
           KW + +  F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 247 KHSADFHPMLLTRETSVL 300
           KH  D+H  +L ++T+VL
Sbjct: 24  KHEIDYHESILNKKTAVL 41


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 284  EKLPYCTCHTALHAKNN 334
            E +PY  C+TA   KN+
Sbjct: 998  ENIPYALCYTAAQLKNS 1014


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,211
Number of Sequences: 5004
Number of extensions: 30052
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)