Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h16
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 40 5e-04
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 39 8e-04
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 32 0.094
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.50
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.87
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.7
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 4.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 6.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 6.1
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.1
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 8.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.1
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 25 8.1
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 119 IQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAED 235
I+ L MGFP R ++AL T E AM WL H ED
Sbjct: 582 IEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMED 620
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 38.7 bits (86), Expect = 8e-04
Identities = 25/119 (21%), Positives = 44/119 (36%)
Frame = +2
Query: 356 LKCDECGKLFKNQDEIEYHAAKTNHSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 535
LKC EC KL + + E+H+ KT+H F
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEK 62
Query: 536 XXXXXXXXXXXXXXXXIKSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
KS E A +++Q+Q + +++ R +K ED + R+++ A+
Sbjct: 63 ERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAE 121
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.9 bits (69), Expect = 0.094
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 119 IQTLIEMGFPKERAEKALAVTNY 187
+Q L+ MGFP+E+A AL TNY
Sbjct: 794 LQELLSMGFPREKAVIALEATNY 816
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +2
Query: 587 KSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
++ +E +QRL+E+E ++++E+R+ + D++ ER R +
Sbjct: 681 EADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRE 722
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 614 KQRLQEQEMQKLVEQRRMEKIEDQKARER 700
+QRL+ ++ +K E R ++ E QK +ER
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKER 671
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 587 KSGKELQDAKQRLQEQEM-QKLVEQRRMEKIEDQKARER 700
++GKE + KQR QE+ + QK E+ + EK Q+ +E+
Sbjct: 73 EAGKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEK 111
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 629 EQEMQKLVEQRRMEKIEDQKARERVRAQ 712
E+E +L EQ+R ++ DQK RE+ AQ
Sbjct: 131 EKERIRLQEQQRRKEERDQKLREKEEAQ 158
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 191 PYNWSRLKLFLLVLWEN-PSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLLS 36
P W +LK +++LW++ P+ S + + + + +M++ K T +F ++S
Sbjct: 344 PTEWDKLKPTIILLWKDFPNYSTLLSIMQERNSKAMYMYKPVTSSIRFLQIIS 396
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 605 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARER 700
Q AKQ Q+++ L +R +ED +A+E+
Sbjct: 623 QKAKQLKQQEDEDNLKRKRSESDVEDNEAKEK 654
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 164 FLLVLWENPSRSMSVFLPLFKFANSMFIVK 75
FL VLW NP +S+ + SMF ++
Sbjct: 353 FLWVLWRNPLPQLSIISHIILSPTSMFDIR 382
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/37 (27%), Positives = 25/37 (67%)
Frame = +2
Query: 602 LQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
+++ K RL E++++++V++ ED+ +ER+ A+
Sbjct: 531 IKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEAR 567
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +2
Query: 605 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERV 703
++AK+R Q + +KL QRR+++ D++ ++
Sbjct: 828 REAKEREQREMAEKLERQRRIQQERDEEISRKL 860
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYH 412
K +C+ C K +KN + ++YH
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH 417
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYHAAKTNHSS 436
KS C EC K FK + + H ++ H+S
Sbjct: 421 KSFVCPECSKKFKRSEHLRRH-IRSLHTS 448
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/31 (25%), Positives = 22/31 (70%)
Frame = +2
Query: 605 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARE 697
++ +QR++E+E + E++R+ ++E+ + E
Sbjct: 261 EEEEQRIREEEARIAEEEKRLAEVEEARKEE 291
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 593 GKELQDAKQRLQEQEMQKLVEQRRMEK 673
G+EL +++ RL+ +QKLV Q+R +
Sbjct: 146 GEELSNSQYRLECAAIQKLVAQKRANR 172
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -2
Query: 188 YNWSRLKLFLLVLWENPSRSMSVFLPLFKFANSMFIVKLATFYFQF*SLLS 36
+N ++ L +++ P+ + S + F+F +MFI+ L F F +LL+
Sbjct: 506 FNTTKGALVRSMIFPKPT-NFSFYRDSFRFITAMFIIALIGFVFSSINLLT 555
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 116 EIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNS 265
++QT+IE + ++ L+ T +EP E L+ + + EP N+
Sbjct: 379 QVQTIIEQSIQVDGYDEPLSTTTPTLIEPIQETLMTQSP--IIECEPFNT 426
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 593 GKELQDAKQRLQEQEMQKLVEQRR 664
G ELQDAK+RL E + + +RR
Sbjct: 473 GSELQDAKRRLDELKAKAEDAERR 496
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 146 PKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNSQAGESSA 286
P RA + L +N PAME L A LA+ S+P S SSA
Sbjct: 304 PPFRASEPLPSSNIIP-NPAMERLKNGASKLAIESQPFKSAEPLSSA 349
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 599 ELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVR 706
E + K+R+Q QE + Q+R+E + QK RE+ R
Sbjct: 81 ERSEEKRRIQ-QEKEDAKVQKRLEIEKKQKDREQTR 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,737
Number of Sequences: 5004
Number of extensions: 40728
Number of successful extensions: 152
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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