Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4h16
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 64 9e-11
AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical ... 33 0.15
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 31 1.1
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 31 1.1
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 31 1.1
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 30 1.9
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 30 1.9
L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 2.5
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 29 4.4
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 28 5.8
U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 28 5.8
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 28 5.8
U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical ... 28 7.6
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 28 7.6
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 64.1 bits (149), Expect = 9e-11
Identities = 51/201 (25%), Positives = 81/201 (40%)
Frame = +2
Query: 110 MAEIQTLIEMGFPKERAEKALAVTNYKGVEPAMEWLLAHAEDLAVSSEPSNSQAGESSAP 289
M+ Q L++MGFP ++AE A N + ++ A++W+ +D A P + A +AP
Sbjct: 1 MSIAQQLMDMGFPADKAEAAAG--NNRNLDQALDWI---EKDGA--GVPMETDAPAQAAP 53
Query: 290 VXXXXXXXXXXXXXXXXXXXKSLKCDECGKLFKNQDEIEYHAAKTNHSSFXXXXXXXXXX 469
S KCD+CGKL N D I +HA+KT H +F
Sbjct: 54 ---------GAADSGAPPVAASFKCDDCGKLLANDDAIMFHASKTKHENFSESSEAIKPL 104
Query: 470 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKSGKELQDAKQRLQEQEMQKL 649
+ GK + K+ +++E+++
Sbjct: 105 TAEEKAAKVLEIREKIKVHQAKKAKLEAEENREKEKKRREDGKAMISHKEAARDREIREA 164
Query: 650 VEQRRMEKIEDQKARERVRAQ 712
+ RR EK ED+ AR+RV Q
Sbjct: 165 AQDRRREKNEDEIARKRVLEQ 185
>AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical
protein C24G6.8 protein.
Length = 316
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 128 LIEMGFPKERAEKALAVTNYKGVEPAMEWLL--AHAEDLAVSSEPSNSQAGESSAPV 292
L+++GF + A AL TN GVE A+ W++ ++ D S S ++A E V
Sbjct: 137 LLDLGFDEYTAVLALKRTNSAGVEQAVAWIVERSNESDFDEDSSSSENEADEEMGAV 193
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYHAAKTN 427
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYHAAKTN 427
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYHAAKTN 427
+SL C+ECG+ F+ +++H A N
Sbjct: 537 RSLHCEECGRGFQQHSTLDHHVASHN 562
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYHA 415
K KCD C KLF + E+ HA
Sbjct: 411 KDFKCDTCSKLFFTESELNRHA 432
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/39 (30%), Positives = 27/39 (69%)
Frame = +2
Query: 596 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
KE++D + + E+E +++ E+ R ++IE ++ R R++ Q
Sbjct: 543 KEMEDRQNAIYEEEERRIAEEERRKQIEIEE-RRRIQQQ 580
>L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical
protein ZK353.8 protein.
Length = 469
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 605 QDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
++AKQ + + K +QR+MEK+ + ++R+ AQ
Sbjct: 206 REAKQERDAEALVKAAKQRKMEKLAAESDKKRILAQ 241
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 587 KSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
K +EL+D+ L+ ++R +K E Q A ERV Q
Sbjct: 1421 KIQQELEDSSMELENVRASHRDSEKRQKKFESQMAEERVAVQ 1462
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 353 SLKCDECGKLFKNQDEIEYHAAK 421
SLKC++CG+ F D +E H AK
Sbjct: 108 SLKCEKCGRQFAKND-LEKHRAK 129
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 353 SLKCDECGKLFKNQDEIEYHAAK 421
SLKC++CG+ F D +E H AK
Sbjct: 108 SLKCEKCGRQFAKND-LEKHRAK 129
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 605 QDAKQRL---QEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
Q K RL Q+QEMQ++ +QRR + ++ Q+ +++ Q
Sbjct: 323 QQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQ 361
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 605 QDAKQRL---QEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
Q K RL Q+QEMQ++ +QRR + ++ Q+ +++ Q
Sbjct: 345 QQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQ 383
>U40410-4|AAA81393.1| 259|Caenorhabditis elegans Hypothetical
protein C54G7.1 protein.
Length = 259
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Frame = +3
Query: 633 KRCKNWLNNE---GWRKLKT--RRLENVSVL 710
+ CK+WLN + GW+K KT R+L N + L
Sbjct: 214 RSCKDWLNQKGMTGWQKTKTIQRKLRNSAQL 244
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 605 QDAKQRL---QEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
Q K RL Q+QEMQ++ +QRR + ++ Q+ +++ Q
Sbjct: 323 QQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQ 361
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 605 QDAKQRL---QEQEMQKLVEQRRMEKIEDQKARERVRAQ 712
Q K RL Q+QEMQ++ +QRR + ++ Q+ +++ Q
Sbjct: 345 QQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQ 383
>U41027-4|AAC48196.2| 455|Caenorhabditis elegans Hypothetical
protein R08E3.3a protein.
Length = 455
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 596 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERV 703
KEL DA R QEQ+M K+ E+R + ++++ E V
Sbjct: 379 KEL-DAMVRKQEQDMVKMQEERHALRKQEERESEAV 413
>U41027-3|AAQ82846.1| 516|Caenorhabditis elegans Hypothetical
protein R08E3.3b protein.
Length = 516
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 596 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQKARERV 703
KEL DA R QEQ+M K+ E+R + ++++ E V
Sbjct: 379 KEL-DAMVRKQEQDMVKMQEERHALRKQEERESEAV 413
>AF000194-1|AAK39376.4| 386|Caenorhabditis elegans Hypothetical
protein ZC328.2 protein.
Length = 386
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 350 KSLKCDECGKLFKNQDEIEYH 412
K KC++CG+ F D + H
Sbjct: 273 KPFKCEDCGRFFSRSDHLRTH 293
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +2
Query: 356 LKCDECGKLFKNQDEIEYHAAKTNHSS 436
L+C++CG F+N+ ++++H + HS+
Sbjct: 200 LECEQCGNEFENELDLDHH-IRREHST 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,543
Number of Sequences: 27780
Number of extensions: 222528
Number of successful extensions: 929
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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