Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h16
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.54 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.71 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 596 KELQDAKQRLQEQEMQKLVEQRRMEKIEDQK 688
           K+L+ A Q+LQEQ    +++Q  + +  D+K
Sbjct: 140 KKLEQAIQQLQEQLQLNVIQQTHLLQTADKK 170


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +2

Query: 614  KQRLQEQEMQKLVEQRRMEKIEDQKARER 700
            +Q+ Q+Q+ Q+  +Q++ ++ +  +ARER
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQARER 1239


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 650
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 650
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 579 IESSLVKNYKMPSNDFKSKRCKNW 650
           I SSL  NY   +N++K   C N+
Sbjct: 81  IISSLSNNYNYNNNNYKKLYCNNY 104


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -2

Query: 161 LLVLWENPSRSMSVFLPLFKFANSMFIVKLATFY 60
           + +L + PSRS ++   L  F+N+++I+ + + +
Sbjct: 544 ITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVH 577


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 353 SLKCDECGKLFKNQDEI 403
           +LKCD+C     N +E+
Sbjct: 147 NLKCDKCSTYQSNGEEV 163


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 273 PACELEGSEDTARSSA*AKSHSMAG 199
           P   LEGS D++   +   SHS  G
Sbjct: 59  PPRSLEGSYDSSSGDSPVSSHSSNG 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,681
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)