Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h14
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.8  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   6.8  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   9.0  

>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 272 FTLGSSGLITT*VPLYLLLSPSFFT 198
           F LG   L+ T  P+Y+LLS  + T
Sbjct: 70  FNLGYGWLLLTKYPVYVLLSTYYLT 94


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 338 ILCNIGLFNEKK 373
           ILCN+G+ NEKK
Sbjct: 193 ILCNLGVNNEKK 204


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 48  GLQAYINGCGFEKIAWTANSTGMERDP*NFCLNRL 152
           GL +++N   +  I W  N+TG++ +     +N++
Sbjct: 273 GLDSFLNFPLYWPITWAFNNTGLQCEALAIAINQI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,456
Number of Sequences: 5004
Number of extensions: 29532
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)