Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h09
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.5  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    25   8.5  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   8.5  

>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 59  ISLVNSSLFIFYLFIYVHTEKRT 127
           I+ +N+  F+FYL  +  +EK+T
Sbjct: 45  ITYINTGTFVFYLIPWYFSEKKT 67


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 46   QFFFRFPYRDEY 11
            QFFFR PY D Y
Sbjct: 1099 QFFFRVPYTDTY 1110


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 519 AILEYNSKNKHVXKL*QIEIK 457
           AILE N KNKH+  + Q E K
Sbjct: 298 AILEENEKNKHLINILQKENK 318


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 545 SCSLFNGRSPYWNITAKTNMXLNYNKL 465
           SC  FN    YWN+  + ++ L  N L
Sbjct: 95  SCRRFNFEKEYWNLVFEPSLDLYENGL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,827
Number of Sequences: 5004
Number of extensions: 40088
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)