Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h09
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    40   0.002
12_01_0082 - 662016-663215                                             28   6.6  
12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133           27   8.7  

>08_02_0200 - 14179389-14180488,14180575-14180736,14180983-14181383,
            14182078-14182272,14182980-14183094,14183180-14183428,
            14184032-14184093,14184335-14184435,14184701-14184815,
            14185211-14185302,14187619-14187777
          Length = 916

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +3

Query: 273  RLRELLLANSRDSRLIXMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNHTSVLTF 452
            +L   +L  SR + ++ +SLP P      A  YM +++++  ++P ML VRG    V+TF
Sbjct: 856  KLNSTILRYSRMAAVVLVSLPPPPLNH-PAYFYMEYMDLLVENVPRMLIVRGYRRDVVTF 914

Query: 453  YS 458
            ++
Sbjct: 915  FT 916


>12_01_0082 - 662016-663215
          Length = 399

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 554 FRSSCSLFNGRSPYWN 507
           + SSC  F GR+PYW+
Sbjct: 182 YTSSCKDFRGRTPYWS 197


>12_01_0719 - 6344651-6344809,6344872-6345286,6345967-6346133
          Length = 246

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 318 IXMSLPMPRKGSVSAPLYMAWLEMMSRDLPPML 416
           + ++ P  RK S+SA  Y+A+    S  LPP++
Sbjct: 205 LGLTRPPLRKDSISASTYLAFSHPSSMSLPPVV 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,038,983
Number of Sequences: 37544
Number of extensions: 250962
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)