Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h09
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    95   5e-20
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    95   5e-20
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    57   1e-08
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    51   7e-07
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    46   2e-05
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    43   1e-04

>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
            protein Y37A1C.1c protein.
          Length = 1210

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 46/77 (59%), Positives = 60/77 (77%)
 Frame = +3

Query: 228  ETELTTLSGKTNRQLRLRELLLANSRDSRLIXMSLPMPRKGSVSAPLYMAWLEMMSRDLP 407
            ++EL+    KT RQLR  ELL  +S ++ LI M+LP+PRKG VS+ LYM+WLE+M+R+LP
Sbjct: 1134 KSELSAQRDKTYRQLRAGELLNEHSINADLIVMTLPVPRKGMVSSSLYMSWLEVMTRNLP 1193

Query: 408  PMLFVRGNHTSVLTFYS 458
            P+L VRGN  SVLTFYS
Sbjct: 1194 PVLLVRGNQQSVLTFYS 1210


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
            protein Y37A1C.1c protein.
          Length = 1210

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 46/77 (59%), Positives = 60/77 (77%)
 Frame = +3

Query: 228  ETELTTLSGKTNRQLRLRELLLANSRDSRLIXMSLPMPRKGSVSAPLYMAWLEMMSRDLP 407
            ++EL+    KT RQLR  ELL  +S ++ LI M+LP+PRKG VS+ LYM+WLE+M+R+LP
Sbjct: 1134 KSELSAQRDKTYRQLRAGELLNEHSINADLIVMTLPVPRKGMVSSSLYMSWLEVMTRNLP 1193

Query: 408  PMLFVRGNHTSVLTFYS 458
            P+L VRGN  SVLTFYS
Sbjct: 1194 PVLLVRGNQQSVLTFYS 1210


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical protein
            B0303.11 protein.
          Length = 903

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +3

Query: 234  ELTTLSGKTNRQLRLRELLLANSRDSRLIXMSLPMPRKGSVSAPLYMAWLEMMSRDLPPM 413
            ++  L  KT   LR  EL+  +S D+ LI  +LP  R   + +P+Y+ W++M+SR  PP 
Sbjct: 827  QIFNLREKTRSFLRASELIREHSSDADLIVCTLPSARP-EIPSPIYLGWIDMLSRQTPPT 885

Query: 414  LFVRGNHTSV 443
              VRGN  S+
Sbjct: 886  CLVRGNQVSM 895


>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical protein
            K02A2.3 protein.
          Length = 1020

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
 Frame = +3

Query: 255  KTNRQLRLRELLLANSRDSRLIXMSLPMPRKGSVSAP-LYMAWLEMMSRDLPPMLFVRGN 431
            K N  +RL  ++  NS DS+LI ++LP P +  ++    YM +L++++ DLP +LF+ G+
Sbjct: 952  KMNTSVRLNRVIRENSPDSQLILLNLPSPPRNRLAFNNSYMTYLDVLTEDLPRVLFIGGS 1011

Query: 432  HTSVLTFYS 458
               V+T  S
Sbjct: 1012 GREVITIDS 1020


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 158 protein.
          Length = 1003

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
 Frame = +3

Query: 177  TVNEMDTQ-LELPKCRIXETELTTLSGKTNRQLRLRELLLANSRDSRLIXMSLPMP--RK 347
            T NE   Q  +  K R+   + + +S K +  +RL ELLL +S +S+LI ++LP P   K
Sbjct: 908  TDNEQANQETKTKKERMKALDRSKVS-KMHTAVRLNELLLQHSANSQLILLNLPKPPVHK 966

Query: 348  GSVSAPLYMAWLEMMSRDLPPMLFVRGNHTSVLT 449
               +   Y+ +LE+M+  L  ++FVRG    V+T
Sbjct: 967  DQQALDDYVHYLEVMTDKLNRVIFVRGTGKEVIT 1000


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
            protein H16O14.1 protein.
          Length = 977

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/68 (33%), Positives = 38/68 (55%)
 Frame = +3

Query: 255  KTNRQLRLRELLLANSRDSRLIXMSLPMPRKGSVSAPLYMAWLEMMSRDLPPMLFVRGNH 434
            K +  ++L EL+   S D++L+ ++LP P     S   YM ++E ++  L  +L VRG  
Sbjct: 911  KMHTAVKLNELMRQKSSDAQLVFVNLPGPPDAD-SDSYYMDFIEALTEGLDRVLLVRGTG 969

Query: 435  TSVLTFYS 458
              V+T YS
Sbjct: 970  AEVVTIYS 977


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,001
Number of Sequences: 27780
Number of extensions: 229287
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)