Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h09
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.75 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 85  YFLFIYLCTHRKEDIIQSNRKIMYKG 162
           Y +F+Y+  H+KE + + +R+  Y G
Sbjct: 247 YAIFLYISWHQKELVRRDSRRKNYGG 272



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 392 HHL*PRHVQRRXHGALSGH 336
           +HL   HV    H A+ GH
Sbjct: 274 YHLDNHHVHHANHHAILGH 292


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 354 RSPFWAWVATXR*ASSPLSWRVK 286
           R  +W W AT   AS+P   + K
Sbjct: 26  RPAWWFWTATSHEASAPAEGKFK 48


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 177 TVNEMDTQLELPKCRIXETELTTLSGKTNRQLR 275
           T       ++LPK      +L  ++GK N Q+R
Sbjct: 276 TTVRASVHIKLPKLAANRAKLEEIAGKFNLQVR 308


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 372 MAWLEMMSRDLPPMLFVRGNHT 437
           + WL      LPP+L +   HT
Sbjct: 164 LVWLGAACISLPPLLIMGNEHT 185


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 390 SSLATPCTAAXTRSPFWAWVATXR*ASSPLS 298
           +  ATPCT +  R P     +  + A+S +S
Sbjct: 388 AQFATPCTPSPPRGPGGVPTSVIQAATSSVS 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,899
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)