Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4h07
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   147   7e-37
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   0.68 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   4.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   6.3  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   6.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   8.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    24   8.4  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  147 bits (356), Expect = 7e-37
 Identities = 70/109 (64%), Positives = 86/109 (78%)
 Frame = +1

Query: 1   AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 180
           AVRRA YGVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATR
Sbjct: 116 AVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATR 175

Query: 181 HVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 327
           HVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 176 HVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 28   LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 183
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 93   STCQINEVCR-WTHDPLWRPLQ*LRQHCYQT 182
            + C   + CR W   P W+ +  + Q+C+ T
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDT 1450


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 91  GQRAKSMKFVDGLMIHSGDPCNDYVN 168
           G+R K + F D    H G P  DY++
Sbjct: 218 GRREKLLVFGDDYDSHDGTPIRDYIH 243


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 148 PCNDYVNTATRHVL 189
           PC+DYV  A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 255 RPEEATTRPHP 287
           +PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 308 SSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRST 183
           SS G ++ +     +    LPCWS G  +  L  ++  L  T
Sbjct: 110 SSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMT 151


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 202 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 345
           VLG  +KI   W    K+ P+K +   I +  P+     L P+SE ++
Sbjct: 61  VLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,845
Number of Sequences: 5004
Number of extensions: 31784
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)